CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033602_P002	Maize	nucleus	89.89	90.91
Os03t0696300-01	Rice	nucleus	74.16	76.15
TraesCS4D01G033700.1	Wheat	nucleus	70.04	70.3
TraesCS4A01G277300.1	Wheat	nucleus	68.91	69.17
GSMUA_Achr4P03600_001	Banana	nucleus	41.57	37.25
CDX78492	Canola	nucleus	28.46	37.07
EES17387	Sorghum	nucleus	28.84	36.15
GSMUA_Achr3P29730_001	Banana	nucleus	42.7	35.62
EER92762	Sorghum	nucleus	32.58	35.08
Bra023378.1-P	Field mustard	nucleus	31.46	35.0
CDX85686	Canola	nucleus	30.71	34.75
Bra006165.1-P	Field mustard	nucleus	32.58	34.25
CDX91161	Canola	nucleus	28.09	34.25
Bra023913.1-P	Field mustard	nucleus	22.85	33.89
CDY37330	Canola	nucleus	22.85	33.89
Solyc10g079150.1.1	Tomato	nucleus	27.34	33.33
CDX70480	Canola	nucleus	32.21	33.2
AT5G12840.3	Thale cress	nucleus	33.71	33.09
PGSC0003DMT400021053	Potato	nucleus	29.21	32.5
KRH27472	Soybean	nucleus	36.7	32.34
VIT_08s0007g08250.t01	Wine grape	nucleus	42.32	31.92
GSMUA_Achr4P11090_001	Banana	vacuole	43.07	31.42
VIT_06s0004g02270.t01	Wine grape	nucleus	35.96	31.37
KRH20817	Soybean	nucleus	35.21	30.92
KRG98391	Soybean	nucleus	38.2	30.18
CDY53967	Canola	nucleus	31.84	29.93
CDX97206	Canola	nucleus	31.84	29.82
KRH46473	Soybean	nucleus	37.45	29.76
Bra008878.1-P	Field mustard	nucleus	31.09	29.33
CDY06393	Canola	nucleus	31.84	28.52
VIT_13s0064g00860.t01	Wine grape	nucleus	43.07	28.4
CDX82223	Canola	nucleus	29.59	28.21
Bra031242.1-P	Field mustard	nucleus	30.71	27.8
AT3G20910.1	Thale cress	nucleus	31.09	27.39
KRH73967	Soybean	nucleus	31.09	27.04
KRH14162	Soybean	nucleus	31.09	27.04
CDY19591	Canola	nucleus	29.59	26.87
CDY32398	Canola	nucleus	28.84	25.84
Bra001806.1-P	Field mustard	nucleus	29.59	25.65
OQU85816	Sorghum	nucleus	28.46	25.0
EER99688	Sorghum	nucleus	28.09	24.92
EER94699	Sorghum	nucleus	28.46	24.6
KXG37939	Sorghum	nucleus	29.21	22.61
OQU88458	Sorghum	nucleus	22.85	18.89
OQU79642	Sorghum	plastid	29.59	18.85

Protein Annotations

MapMan:15.5.51.1	UniProt:A0A1B6QIQ6	InterPro:CCAAT-binding_factor_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016602	InterPro:IPR001289	ProteinID:KXG37796.1	EnsemblPlants:KXG37797	ProteinID:KXG37797	ProteinID:KXG37797.1
InterPro:NFYA	PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632
SMART:SM00521	EnsemblPlantsGene:SORBI_3001G127800	UniParc:UPI0001C80D7A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:10067647..10074713

Molecular Weight (calculated)

28090.8 Da

IEP (calculated)

9.991

GRAVY (calculated)

-0.710

Length

267 amino acids

Sequence
(BLAST)

001: MESRPGGTNL VEPRGQGAAA LPSGGPAVQP WWTSSGAVLG AVSPAVVAPG SGVGIGLSSS PAGGSGGGGT AKGAASDESS EDSRRSGEPR DGSSGQEKNH
101: ATSQIPALVP EYLAPYSQLE LNQSIASAAY QYPDPYYSGM VAPYGSQAVA HFQLPGLTQS RMPLPLEVSE EPVYVNAKQY HGILRRRQSR AKAELEKKVV
201: KARKPYLHES RHQHAMRRAR GNGGRFLNTK KSDNGTPNGR AEPKKGDGNS EHLHVPPDLL QLRQNGA

Best Arabidopsis Sequence Match ( AT5G12840.2 )
(BLAST)

001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSDNHGMEGN
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P

Arabidopsis Description

NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.