Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006165.1-P | Field mustard | nucleus | 96.59 | 77.95 |
| CDX70480 | Canola | nucleus | 89.76 | 71.04 |
| CDX91161 | Canola | nucleus | 70.24 | 65.75 |
| CDX85686 | Canola | nucleus | 71.22 | 61.86 |
| CDY53967 | Canola | nucleus | 81.46 | 58.8 |
| CDX97206 | Canola | nucleus | 80.98 | 58.25 |
| CDY37330 | Canola | nucleus | 30.73 | 35.0 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 52.2 | 34.97 |
| KRG98391 | Soybean | nucleus | 56.1 | 34.02 |
| KRH46473 | Soybean | nucleus | 55.12 | 33.63 |
| CDY02298 | Canola | nucleus | 29.27 | 32.79 |
| Solyc11g065700.1.1 | Tomato | nucleus | 46.83 | 32.0 |
| PGSC0003DMT400018959 | Potato | nucleus | 46.83 | 32.0 |
| CDY09571 | Canola | nucleus | 28.29 | 31.69 |
| CDX82223 | Canola | nucleus | 42.44 | 31.07 |
| CDY05192 | Canola | nucleus | 26.83 | 30.73 |
| PGSC0003DMT400027785 | Potato | nucleus | 46.34 | 30.65 |
| CDY06393 | Canola | nucleus | 44.39 | 30.54 |
| Solyc01g008490.2.1 | Tomato | nucleus | 45.85 | 30.13 |
| TraesCS4A01G277300.1 | Wheat | nucleus | 39.02 | 30.08 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 38.05 | 29.32 |
| Os03t0696300-01 | Rice | nucleus | 37.07 | 29.23 |
| CDX84285 | Canola | nucleus | 27.8 | 29.08 |
| KRH73967 | Soybean | nucleus | 43.41 | 28.99 |
| KRH14162 | Soybean | nucleus | 43.41 | 28.99 |
| CDY32398 | Canola | nucleus | 41.95 | 28.86 |
| KXG37797 | Sorghum | nucleus | 37.07 | 28.46 |
| CDY19591 | Canola | nucleus | 40.49 | 28.23 |
| Zm00001d033602_P002 | Maize | nucleus | 36.1 | 28.03 |
| CDY31636 | Canola | nucleus | 26.83 | 27.92 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 39.02 | 26.85 |
| CDY69800 | Canola | nucleus | 29.27 | 25.97 |
| CDY26138 | Canola | nucleus | 29.27 | 25.53 |
| CDY02477 | Canola | nucleus | 28.29 | 25.44 |
| CDY56623 | Canola | nucleus | 28.78 | 25.21 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 37.56 | 24.06 |
| CDY51397 | Canola | nucleus | 32.2 | 23.16 |
| CDY48025 | Canola | nucleus | 32.68 | 23.02 |
| CDY33084 | Canola | nucleus | 33.17 | 22.74 |
| CDY18809 | Canola | nucleus | 29.76 | 22.26 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 39.51 | 22.13 |
| CDX98930 | Canola | nucleus | 28.29 | 21.72 |
| CDX96435 | Canola | nucleus | 33.17 | 21.12 |
| CDX82133 | Canola | nucleus | 32.68 | 21.0 |
| CDY14662 | Canola | nucleus | 28.78 | 21.0 |
| CDX74133 | Canola | nucleus | 28.78 | 21.0 |
| CDX70098 | Canola | nucleus | 27.32 | 20.97 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 24.39 | 20.83 |
| CDX72950 | Canola | nucleus | 33.66 | 20.12 |
| CDY39091 | Canola | nucleus | 27.8 | 18.51 |
| CDY21741 | Canola | nucleus | 28.78 | 18.32 |
| CDY33253 | Canola | nucleus | 27.32 | 18.18 |
| CDY70458 | Canola | nucleus | 32.2 | 16.3 |
| CDY30854 | Canola | nucleus | 10.73 | 15.07 |
| CDX81837 | Canola | nucleus | 18.54 | 12.75 |
Protein Annotations
| MapMan:15.5.51.1 | GO:A0A078CP20 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:CDX78492 | ProteinID:CDX78492 | ProteinID:CDX78492.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | EnsemblPlantsGene:GSBRNA2T00129889001 | InterPro:IPR001289 |
| InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF14 | SMART:SM00521 | UniParc:UPI0004EEA955 | SEG:seg | : | : |
Description
BnaA03g04040D
Coordinates
chrLK031815:-:991184..992800
Molecular Weight (calculated)
22510.2 Da
IEP (calculated)
8.887
GRAVY (calculated)
-0.903
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKVNIWAVH SASGDDGAWK DTQAATSSPS VDNHGVEGND PAASVGNVHD QQQLVQPPEL VGHYIACVPN PYQDPYYGGM VGAYGHQQLQ GFRPYPGMPG
101: ERTALPLDMT QEPVYVNAKQ YHGILRRRKA RAKAELERKL INRKPYLHES RHKHAMKRAR ASGGRFAKKT EAEAAAERER EKGSATNSPG SEPVETDSND
201: SLPNL
101: ERTALPLDMT QEPVYVNAKQ YHGILRRRKA RAKAELERKL INRKPYLHES RHKHAMKRAR ASGGRFAKKT EAEAAAERER EKGSATNSPG SEPVETDSND
201: SLPNL
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.