Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48025 | Canola | nucleus | 84.64 | 92.78 |
| CDX96435 | Canola | nucleus | 84.01 | 83.23 |
| AT1G72830.2 | Thale cress | nucleus | 86.52 | 80.94 |
| CDX72950 | Canola | nucleus | 83.07 | 77.26 |
| CDY70458 | Canola | nucleus | 85.89 | 67.65 |
| Zm00001d029489_P002 | Maize | nucleus | 17.24 | 61.11 |
| CDY21741 | Canola | nucleus | 61.13 | 60.56 |
| CDX81837 | Canola | nucleus | 53.29 | 57.05 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 35.42 | 47.08 |
| CDY69800 | Canola | nucleus | 32.92 | 45.45 |
| CDY26138 | Canola | nucleus | 32.6 | 44.26 |
| CDY56623 | Canola | nucleus | 31.03 | 42.31 |
| CDY02477 | Canola | nucleus | 30.09 | 42.11 |
| CDY30854 | Canola | nucleus | 18.18 | 39.73 |
| KRH47551 | Soybean | nucleus | 42.95 | 39.37 |
| Os03t0174900-01 | Rice | vacuole | 25.71 | 39.23 |
| CDY51397 | Canola | nucleus | 34.8 | 38.95 |
| KRH06120 | Soybean | nucleus | 37.93 | 37.93 |
| CDY33084 | Canola | nucleus | 35.11 | 37.46 |
| EER92762 | Sorghum | nucleus | 28.53 | 36.69 |
| Os07t0608200-01 | Rice | nucleus | 34.8 | 36.51 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 33.23 | 36.43 |
| CDY39091 | Canola | nucleus | 35.11 | 36.36 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 32.6 | 36.11 |
| CDY09571 | Canola | nucleus | 20.69 | 36.07 |
| CDY02298 | Canola | nucleus | 20.69 | 36.07 |
| CDY33253 | Canola | nucleus | 34.8 | 36.04 |
| KRH10071 | Soybean | nucleus | 33.23 | 35.69 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 27.27 | 35.66 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 26.96 | 35.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.54 | 34.29 |
| EER94699 | Sorghum | nucleus | 32.92 | 33.98 |
| PGSC0003DMT400006358 | Potato | nucleus | 30.09 | 33.92 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 33.54 | 33.75 |
| CDY31636 | Canola | nucleus | 20.69 | 33.5 |
| CDX84285 | Canola | nucleus | 20.38 | 33.16 |
| Solyc03g121940.2.1 | Tomato | nucleus | 24.76 | 32.78 |
| CDY37330 | Canola | nucleus | 18.5 | 32.78 |
| CDX78492 | Canola | nucleus | 21.0 | 32.68 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 30.72 | 32.67 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 30.72 | 32.67 |
| EER99688 | Sorghum | nucleus | 30.72 | 32.56 |
| CDY05192 | Canola | nucleus | 18.18 | 32.4 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 30.72 | 32.34 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 33.86 | 32.14 |
| Os03t0411100-01 | Rice | nucleus | 31.03 | 31.23 |
| Zm00001d006835_P002 | Maize | nucleus | 28.84 | 30.67 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 27.59 | 30.34 |
| Zm00001d022109_P003 | Maize | nucleus | 28.53 | 30.23 |
| TraesCS6B01G366100.2 | Wheat | nucleus | 23.82 | 29.8 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 31.03 | 29.55 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 23.51 | 29.53 |
| Zm00001d027874_P004 | Maize | nucleus | 24.14 | 29.28 |
| TraesCS6A01G335400.1 | Wheat | nucleus | 23.2 | 29.13 |
| CDX85686 | Canola | nucleus | 20.69 | 27.97 |
| CDX82223 | Canola | nucleus | 24.45 | 27.86 |
| CDX91161 | Canola | nucleus | 19.12 | 27.85 |
| CDY06393 | Canola | nucleus | 25.71 | 27.52 |
| CDY53967 | Canola | nucleus | 24.14 | 27.11 |
| Os02t0776400-01 | Rice | nucleus | 22.88 | 27.04 |
| CDX97206 | Canola | nucleus | 24.14 | 27.02 |
| CDY32398 | Canola | nucleus | 25.08 | 26.85 |
| CDX70480 | Canola | nucleus | 21.63 | 26.64 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 24.14 | 26.28 |
| OQU85816 | Sorghum | nucleus | 24.45 | 25.66 |
| CDY19591 | Canola | nucleus | 23.51 | 25.51 |
| HORVU6Hr1G081080.12 | Barley | nucleus | 22.26 | 25.27 |
| CDY18809 | Canola | nucleus | 20.69 | 24.09 |
| CDX74133 | Canola | nucleus | 21.0 | 23.84 |
| CDY14662 | Canola | nucleus | 21.0 | 23.84 |
| CDX70098 | Canola | nucleus | 19.44 | 23.22 |
| CDX98930 | Canola | nucleus | 19.12 | 22.85 |
| Zm00001d026305_P002 | Maize | nucleus | 22.88 | 16.15 |
Protein Annotations
| MapMan:15.5.51.1 | GO:A0A078D4D2 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:CDX82133 | ProteinID:CDX82133 | ProteinID:CDX82133.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | EnsemblPlantsGene:GSBRNA2T00137180001 |
| InterPro:IPR001289 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF8 | SMART:SM00521 | UniParc:UPI0004EE95D3 | SEG:seg | : |
Description
BnaC02g21570D
Coordinates
chrLK031827:+:916668..918688
Molecular Weight (calculated)
35318.4 Da
IEP (calculated)
9.510
GRAVY (calculated)
-0.742
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MHQMNKKDST LPYLNTSISW GVVPAEPLSM KVVDARPKHT TKQISFQDQD SSSTQSTGQS YTDIASSGDD DNPSRQISFS TKSGSEETQH KGFATHPKPG
101: SMTGLPSIHF APTQANFSFH YADPQFGGLL AATYLPQAPA CNHQMVGMVP GRVPLPVEIT ETEPVFVNAK QYHAIMRRRQ QRAKLEAQNK LIKARKPYLH
201: ESRHVHALKR PRGSGGRFLN TKKLLQESEQ AAAKEQEESK KANMSRFEAH MLQHSKDRSS TTSGSDITSV SDGADVFGHT EFQFSGFPIP TQTNRAMLVH
301: DQSNDMHGGG DLHHFSVHI
101: SMTGLPSIHF APTQANFSFH YADPQFGGLL AATYLPQAPA CNHQMVGMVP GRVPLPVEIT ETEPVFVNAK QYHAIMRRRQ QRAKLEAQNK LIKARKPYLH
201: ESRHVHALKR PRGSGGRFLN TKKLLQESEQ AAAKEQEESK KANMSRFEAH MLQHSKDRSS TTSGSDITSV SDGADVFGHT EFQFSGFPIP TQTNRAMLVH
301: DQSNDMHGGG DLHHFSVHI
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.