Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 91.1 | 55.42 |
| Zm00001d029489_P002 | Maize | nucleus | 13.01 | 21.11 |
| CDX96435 | Canola | nucleus | 43.15 | 19.57 |
| CDX72950 | Canola | nucleus | 43.84 | 18.66 |
| CDY48025 | Canola | nucleus | 36.99 | 18.56 |
| CDX82133 | Canola | nucleus | 39.73 | 18.18 |
| AT1G72830.2 | Thale cress | nucleus | 41.1 | 17.6 |
| CDY70458 | Canola | nucleus | 42.47 | 15.31 |
| CDY05192 | Canola | nucleus | 18.49 | 15.08 |
| CDY37330 | Canola | nucleus | 18.49 | 15.0 |
| CDY26138 | Canola | nucleus | 23.29 | 14.47 |
| CDY69800 | Canola | nucleus | 22.6 | 14.29 |
| CDY02298 | Canola | nucleus | 17.81 | 14.21 |
| CDY09571 | Canola | nucleus | 17.81 | 14.21 |
| CDY56623 | Canola | nucleus | 21.92 | 13.68 |
| CDY02477 | Canola | nucleus | 21.23 | 13.6 |
| CDY21741 | Canola | nucleus | 29.45 | 13.35 |
| CDY31636 | Canola | nucleus | 17.81 | 13.2 |
| CDX84285 | Canola | nucleus | 17.12 | 12.76 |
| Solyc03g121940.2.1 | Tomato | nucleus | 20.55 | 12.45 |
| Os03t0174900-01 | Rice | vacuole | 17.81 | 12.44 |
| Os02t0776400-01 | Rice | nucleus | 22.6 | 12.22 |
| CDY51397 | Canola | nucleus | 23.29 | 11.93 |
| CDY33253 | Canola | nucleus | 24.66 | 11.69 |
| CDY39091 | Canola | nucleus | 24.66 | 11.69 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 19.86 | 11.42 |
| TraesCS6B01G366100.2 | Wheat | nucleus | 19.86 | 11.37 |
| CDY33084 | Canola | nucleus | 23.29 | 11.37 |
| TraesCS6A01G335400.1 | Wheat | nucleus | 19.18 | 11.02 |
| KRH47551 | Soybean | nucleus | 26.03 | 10.92 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 22.6 | 10.89 |
| Os07t0608200-01 | Rice | nucleus | 22.6 | 10.86 |
| CDX78492 | Canola | nucleus | 15.07 | 10.73 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 21.92 | 10.67 |
| PGSC0003DMT400006358 | Potato | nucleus | 20.55 | 10.6 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 21.23 | 10.58 |
| EER92762 | Sorghum | nucleus | 17.81 | 10.48 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 23.97 | 10.42 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 22.6 | 10.41 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 21.23 | 10.33 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 17.12 | 10.33 |
| HORVU6Hr1G081080.12 | Barley | nucleus | 19.86 | 10.32 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 20.55 | 10.31 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 17.12 | 10.25 |
| OQU85816 | Sorghum | nucleus | 21.23 | 10.2 |
| KRH06120 | Soybean | nucleus | 21.92 | 10.03 |
| Zm00001d006835_P002 | Maize | nucleus | 20.55 | 10.0 |
| EER99688 | Sorghum | nucleus | 20.55 | 9.97 |
| CDY18809 | Canola | nucleus | 18.49 | 9.85 |
| CDX85686 | Canola | nucleus | 15.75 | 9.75 |
| CDX70098 | Canola | nucleus | 17.81 | 9.74 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 19.18 | 9.72 |
| EER94699 | Sorghum | nucleus | 20.55 | 9.71 |
| CDX82223 | Canola | nucleus | 18.49 | 9.64 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.55 | 9.62 |
| CDX74133 | Canola | nucleus | 18.49 | 9.61 |
| CDY14662 | Canola | nucleus | 18.49 | 9.61 |
| CDX91161 | Canola | nucleus | 14.38 | 9.59 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 21.92 | 9.55 |
| Os03t0411100-01 | Rice | nucleus | 20.55 | 9.46 |
| KRH10071 | Soybean | nucleus | 19.18 | 9.43 |
| CDY06393 | Canola | nucleus | 19.18 | 9.4 |
| CDX98930 | Canola | nucleus | 17.12 | 9.36 |
| Zm00001d022109_P003 | Maize | nucleus | 19.18 | 9.3 |
| CDY32398 | Canola | nucleus | 17.81 | 8.72 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 17.12 | 8.62 |
| CDX70480 | Canola | nucleus | 15.07 | 8.49 |
| CDX97206 | Canola | nucleus | 16.44 | 8.42 |
| CDY53967 | Canola | nucleus | 15.75 | 8.1 |
| CDY19591 | Canola | nucleus | 15.75 | 7.82 |
| CDX81837 | Canola | nucleus | 13.01 | 6.38 |
| Zm00001d027874_P004 | Maize | nucleus | 7.53 | 4.18 |
| Zm00001d026305_P002 | Maize | nucleus | 8.9 | 2.88 |
Protein Annotations
| EnsemblPlants:CDY30854 | EnsemblPlantsGene:GSBRNA2T00046328001 | GO:A0A078H088 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001289 |
| InterPro:NFYA | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF8 | PFAM:PF02045 | PFscan:PS51152 | ProteinID:CDY30854 |
| ProteinID:CDY30854.1 | SEG:seg | UniParc:UPI0004EC22DE | UniProt:A0A078H088 | MapMan:15.5.51.1 | : |
Description
BnaC04g27090DBnaC04g27090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H088]
Coordinates
chrLK032262:+:182382..182822
Molecular Weight (calculated)
16423.2 Da
IEP (calculated)
8.385
GRAVY (calculated)
0.027
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MLISVFFLLQ QPYLHESRHV HALKRPRGSG GRFLNTKKLL QESEQAAAKE QERDKSVQQA MRQTCLDSKL ICYSTTKTVV AQPLLALTSH LFPKVLISSD
101: TLNSCFRVSQ QLGLTELCLF MVSPMTCMEV GTCTISLSIS ETLDLW
101: TLNSCFRVSQ QLGLTELCLF MVSPMTCMEV GTCTISLSIS ETLDLW
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.