Factsheet for GSMUA_AchrUn_randomP15140_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029489_P002	Maize	nucleus	20.51	71.11
GSMUA_Achr8P30700_001	Banana	nucleus	63.46	62.46
GSMUA_Achr2P21730_001	Banana	nucleus	49.36	52.92
EER92762	Sorghum	nucleus	41.35	52.02
Os03t0174900-01	Rice	vacuole	33.33	49.76
GSMUA_Achr8P16700_001	Banana	nucleus	45.51	49.31
TraesCS4B01G290400.1	Wheat	nucleus	38.14	48.77
TraesCS4D01G289600.1	Wheat	nucleus	37.82	48.76
TraesCS2B01G198700.1	Wheat	nucleus	43.27	45.0
TraesCS2A01G172500.1	Wheat	nucleus	42.63	43.89
EER94699	Sorghum	nucleus	42.63	43.04
Os07t0608200-01	Rice	nucleus	41.67	42.76
HORVU2Hr1G032130.4	Barley	nucleus	41.03	42.67
EER99688	Sorghum	nucleus	41.03	42.52
Os03t0411100-01	Rice	nucleus	42.95	42.27
Zm00001d006835_P002	Maize	nucleus	40.06	41.67
Zm00001d022109_P003	Maize	nucleus	40.06	41.53
KRH37469	Soybean	nucleus	29.81	40.79
HORVU4Hr1G075830.4	Barley	nucleus	37.5	40.34
TraesCS2D01G179600.2	Wheat	nucleus	43.27	40.3
Zm00001d027874_P004	Maize	nucleus	33.65	39.92
KRH12475	Soybean	nucleus	29.17	39.91
KRH02649	Soybean	nucleus	26.92	39.44
KRH19255	Soybean	nucleus	28.85	38.63
GSMUA_Achr7P07860_001	Banana	nucleus	24.36	37.81
PGSC0003DMT400055982	Potato	nucleus	25.0	36.11
CDY48025	Canola	nucleus	33.65	36.08
Bra008052.1-P	Field mustard	nucleus	33.65	36.08
Bra037968.1-P	Field mustard	nucleus	29.49	36.08
CDY02477	Canola	nucleus	25.96	35.53
CDY69800	Canola	nucleus	25.96	35.06
Bra014368.1-P	Field mustard	nucleus	25.64	34.63
CDY26138	Canola	nucleus	25.96	34.47
GSMUA_Achr4P31650_001	Banana	nucleus	24.68	33.77
GSMUA_Achr9P10300_001	Banana	nucleus	25.32	33.76
CDY56623	Canola	nucleus	25.32	33.76
Bra030996.1-P	Field mustard	mitochondrion	22.76	33.65
CDX82133	Canola	nucleus	34.29	33.54
Bra030899.1-P	Field mustard	nucleus	26.92	33.47
GSMUA_Achr7P01070_001	Banana	nucleus	24.68	32.91
CDY51397	Canola	nucleus	29.49	32.28
KRH47551	Soybean	nucleus	35.26	31.61
Bra016031.1-P	Field mustard	nucleus	32.37	31.37
CDX96435	Canola	nucleus	32.37	31.37
CDY33084	Canola	nucleus	29.81	31.1
Solyc08g062210.2.1	Tomato	nucleus	31.73	30.46
KRH06120	Soybean	nucleus	31.09	30.41
KRH10071	Soybean	nucleus	28.85	30.3
AT1G72830.2	Thale cress	nucleus	33.01	30.21
AT1G17590.3	Thale cress	nucleus	31.41	29.88
CDX72950	Canola	nucleus	32.69	29.74
CDY39091	Canola	nucleus	29.17	29.55
Bra021527.1-P	Field mustard	nucleus	29.17	29.55
AT1G54160.1	Thale cress	nucleus	28.85	29.22
VIT_09s0002g01590.t01	Wine grape	nucleus	31.41	29.17
CDX72947	Canola	nucleus, plasma membrane, plastid	22.44	29.17
CDY33253	Canola	nucleus	28.53	28.9
CDY21741	Canola	nucleus	29.81	28.88
VIT_11s0016g01480.t01	Wine grape	endoplasmic reticulum, golgi	36.86	28.54
AT3G14020.1	Thale cress	nucleus	27.88	28.25
GSMUA_Achr4P03600_001	Banana	nucleus	26.6	27.85
CDY70458	Canola	nucleus	33.65	25.93
GSMUA_Achr3P29730_001	Banana	nucleus	26.28	25.62
GSMUA_Achr4P11090_001	Banana	vacuole	27.88	23.77
CDX81837	Canola	nucleus	22.44	23.49
GSMUA_Achr4P28390_001	Banana	nucleus	23.4	22.67
Zm00001d026305_P002	Maize	nucleus	32.05	22.12
GSMUA_Achr4P31420_001	Banana	mitochondrion, nucleus	23.4	21.66
GSMUA_Achr5P02590_001	Banana	nucleus	22.12	21.3
CDY30854	Canola	nucleus	9.62	20.55

Protein Annotations

MapMan:15.5.51.1	InterPro:CCAAT-binding_factor_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602
EnsemblPlantsGene:GSMUA_AchrUn_randomG15140_001	EnsemblPlants:GSMUA_AchrUn_randomP15140_001	EnsemblPlants:GSMUA_AchrUn_randomT15140_001	InterPro:IPR001289	UniProt:M0U9C3	InterPro:NFYA
PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF27
SMART:SM00521	UniParc:UPI0002951ABF	SEG:seg	:	:	:

Description

nuclear transcription factor Y subunit, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG15140_001]

Coordinates

chrchrUn_random:+:71455326..71464020

Molecular Weight (calculated)

33706.0 Da

IEP (calculated)

8.674

GRAVY (calculated)

-0.393

Length

312 amino acids

Sequence
(BLAST)

001: MGFLAKDGNQ VKQLSHPISD HDSSTQSTGQ SCQEASGTSE DNVHEQHISV NSGVGNTYKN LVDGHMKPIL SLGTSETAFS FPKLDYSQSF AHVPYPCADP
101: YFGGILALCG PHAMIHPQMV GIASSGRVPL PLQPAAEEPL YVNAKQYNAI LRRRQLRAKL EAQNKLIKAR KPYLHESRHL HAMKRARGSG GRFLNTKQLQ
201: QQKQTQTSAI SGCQDHSGSK LCSGSGSIGS SAPSINSNIR TASTNGSMLT QQDHLSFPFP DFHSNVGVGT QGGHTMMGGV VQSFNCSNKC MDPTLVVTLW
301: SVDNLLEILF LS

Best Arabidopsis Sequence Match ( AT1G72830.1 )
(BLAST)

001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI

Arabidopsis Description

HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.