Factsheet for Zm00001d026305_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006835_P002	Maize	nucleus	46.46	70.0
EER99688	Sorghum	nucleus	44.25	66.45
Zm00001d022109_P003	Maize	nucleus	42.26	63.46
Zm00001d029489_P002	Maize	nucleus	10.62	53.33
Os07t0608200-01	Rice	nucleus	31.64	47.04
TraesCS2B01G198700.1	Wheat	nucleus	29.87	45.0
TraesCS2A01G172500.1	Wheat	nucleus	30.09	44.88
HORVU2Hr1G032130.4	Barley	nucleus	29.42	44.33
TraesCS2D01G179600.2	Wheat	nucleus	29.2	39.4
Zm00001d027874_P004	Maize	nucleus	21.02	36.12
GSMUA_Achr8P16700_001	Banana	nucleus	22.35	35.07
GSMUA_Achr2P21730_001	Banana	nucleus	22.57	35.05
GSMUA_Achr8P30700_001	Banana	nucleus	23.01	32.81
GSMUA_AchrUn_...	Banana	nucleus	22.12	32.05
CDY69800	Canola	nucleus	14.6	28.57
Bra014368.1-P	Field mustard	nucleus	14.38	28.14
CDY26138	Canola	nucleus	14.6	28.09
KRH02649	Soybean	nucleus	13.05	27.7
KRH37469	Soybean	nucleus	13.94	27.63
KRH19255	Soybean	nucleus	13.72	26.61
KRH10071	Soybean	nucleus	17.48	26.6
KRH12475	Soybean	nucleus	13.27	26.32
CDY48025	Canola	nucleus	16.37	25.43
CDY56623	Canola	nucleus	13.05	25.21
Bra008052.1-P	Field mustard	nucleus	16.15	25.09
CDY02477	Canola	nucleus	12.61	25.0
Bra037968.1-P	Field mustard	nucleus	13.94	24.71
PGSC0003DMT400055982	Potato	nucleus	11.73	24.54
CDY51397	Canola	nucleus	14.82	23.51
Bra030899.1-P	Field mustard	nucleus	13.05	23.51
CDX96435	Canola	nucleus	16.59	23.29
Bra016031.1-P	Field mustard	nucleus	16.37	22.98
CDX82133	Canola	nucleus	16.15	22.88
Zm00001d018255_P001	Maize	endoplasmic reticulum, extracellular, golgi	14.82	22.87
Bra030996.1-P	Field mustard	mitochondrion	10.62	22.75
CDY33084	Canola	nucleus	15.04	22.74
CDX72950	Canola	nucleus	17.26	22.74
Zm00001d033602_P002	Maize	nucleus	13.27	22.73
KRH06120	Soybean	nucleus	15.93	22.57
Solyc08g062210.2.1	Tomato	nucleus	16.15	22.46
KRH47551	Soybean	nucleus	17.26	22.41
AT1G54160.1	Thale cress	nucleus	15.27	22.4
AT1G72830.2	Thale cress	nucleus	16.37	21.7
AT3G14020.1	Thale cress	nucleus	14.6	21.43
CDY39091	Canola	nucleus	14.38	21.1
Bra021527.1-P	Field mustard	nucleus	14.38	21.1
CDY21741	Canola	nucleus	14.82	20.81
VIT_11s0016g01480.t01	Wine grape	endoplasmic reticulum, golgi	18.36	20.6
CDY33253	Canola	nucleus	13.94	20.45
AT1G17590.3	Thale cress	nucleus	14.82	20.43
VIT_09s0002g01590.t01	Wine grape	nucleus	14.82	19.94
CDX72947	Canola	nucleus, plasma membrane, plastid	10.18	19.17
CDX81837	Canola	nucleus	12.39	18.79
CDY70458	Canola	nucleus	16.37	18.27
Zm00001d041491_P001	Maize	nucleus	11.06	17.3
Zm00001d033215_P001	Maize	nucleus	9.96	13.98
Zm00001d031092_P001	Maize	nucleus	10.18	13.94
Zm00001d013676_P002	Maize	nucleus	9.96	13.2
Zm00001d007882_P001	Maize	nucleus	7.96	12.24
CDY30854	Canola	nucleus	2.88	8.9

Protein Annotations

KEGG:00970+6.1.1.16	MapMan:15.5.51.1	MapMan:17.2.5	Gene3D:3.40.50.620	UniProt:A0A1D6JEF6	ProteinID:AQK46196.1
InterPro:CCAAT-binding_factor_CS	InterPro:Cys-tRNA/MSH_ligase	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602
InterPro:IPR001289	InterPro:IPR014729	InterPro:NFYA	PFAM:PF01406	PFAM:PF02045	PRINTS:PR00983
ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF27	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00521
SUPFAM:SSF52374	UniParc:UPI0008451A01	EnsemblPlantsGene:Zm00001d026305	EnsemblPlants:Zm00001d026305_P002	EnsemblPlants:Zm00001d026305_T002	SEG:seg
InterPro:tRNA-synt_1_cat_dom	:	:	:	:	:

Description

CCAAT-HAP2-transcription factor 27Nuclear transcription factor Y subunit A-8

Coordinates

chr10:+:143264094..143272286

Molecular Weight (calculated)

50837.3 Da

IEP (calculated)

6.723

GRAVY (calculated)

-0.683

Length

452 amino acids

Sequence
(BLAST)

001: MPVILREMED HSVHPMSKSN HGSLSGNGYE MKHSGHKVCD WDSSSKSDRS HQEASAASES SPNEHTSTQS DNDEDHGKDN QDTMKPVLSL GKEGSAFLAP
101: KLHYSPSFAC IPYTVDAYYS GVGVLTGYAP HAIVCSLLIF QFLSSWPHSV HPQQNDTTNT PGMLPVEPAE EPIYVNAKQY HAILRRRQTR AKLEAQNKMV
201: KNRKVIHSNF PIPDADLAAK EGEPFWDSPW GRGRPGWHIE CSAMSAHYLG HVFDIHGGGK DLIFPHHENE LAQSQAAYPE SEVKCWMHNG FVNKDDKKMA
301: KSDNNFSRLE ISDVNHSDQA LEIASDRVYY IYQILNTSFV KAFTCLKEDV GLLLLHHHRY HATCWNATAG QEHGDEQAQD DSKWRRIPTF DDWNLRDDMP
401: VTQYLQAGTS SSLCRRQRRT TTRICSRCPC VPCQALQLQE VLGANSGLRG PQ

Best Arabidopsis Sequence Match ( AT2G31170.2 )
(BLAST)

001: MEQLQCLDPS VQPRVSDHIP QIIDLIKQIL DNGYAYKVDG DIYFSVDKFP TYGKLSGRKL EDNRAGERVA VDTRKKHPAD FALWKAAKEG EPFWESPWGR
101: GRPGWHIECS AMSAAYLGYS FDIHGGGMDL VFPHHENEIA QSCAACDSSN ISYWIHNGFV TVDSEKMSKS LGNFFTIRQV IDLYHPLALR LFLMGTHYRS
201: PINYSDFLLE SASERIFYIY QTLHDCESAL GEKDSTFENG SVPSDTLTSI NTFRTEFVAS MSDDLLTPVT LAAMSEPLKT INDLIHTRKG KKQARREESL
301: KALETTIRDV LTILGLMPTS YSEVLEQLKE KALKRAGLKE EDVLQRVQER TDARKNKEYE RSDAIRKDLA KVGIALMDSP EGTTWRPAIP LALQEPVTTT
401: P

Arabidopsis Description

SYCOSYCO ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VWT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.