Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 6
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029489_P002 | Maize | nucleus | 13.9 | 62.22 |
| KRH37469 | Soybean | nucleus | 31.02 | 54.82 |
| KRH12475 | Soybean | nucleus | 30.77 | 54.39 |
| KRH02649 | Soybean | nucleus | 28.29 | 53.52 |
| KRH19255 | Soybean | nucleus | 30.52 | 52.79 |
| Solyc12g009050.1.1 | Tomato | nucleus | 32.26 | 51.38 |
| EER92762 | Sorghum | nucleus | 27.05 | 43.95 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 31.02 | 42.96 |
| Os03t0174900-01 | Rice | vacuole | 22.08 | 42.58 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 25.06 | 41.39 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 24.81 | 41.32 |
| PGSC0003DMT400000740 | Potato | nucleus | 30.77 | 41.2 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 29.28 | 40.97 |
| Os07t0608200-01 | Rice | nucleus | 29.53 | 39.14 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 30.02 | 38.17 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 31.02 | 37.2 |
| EER94699 | Sorghum | nucleus | 28.29 | 36.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.54 | 36.86 |
| VIT_10s0003g04650.t01 | Wine grape | nucleus | 18.86 | 36.54 |
| Os02t0776400-01 | Rice | nucleus | 24.32 | 36.3 |
| TraesCS6B01G366100.2 | Wheat | nucleus | 22.83 | 36.08 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 22.58 | 35.83 |
| Os03t0411100-01 | Rice | nucleus | 28.04 | 35.65 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 25.56 | 35.52 |
| TraesCS6A01G335400.1 | Wheat | nucleus | 22.33 | 35.43 |
| EER99688 | Sorghum | nucleus | 26.3 | 35.22 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 25.81 | 34.67 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 26.05 | 34.65 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 25.56 | 34.33 |
| Zm00001d022109_P003 | Maize | nucleus | 25.31 | 33.89 |
| Zm00001d006835_P002 | Maize | nucleus | 25.06 | 33.67 |
| Zm00001d027874_P004 | Maize | nucleus | 21.84 | 33.46 |
| OQU85816 | Sorghum | nucleus | 24.57 | 32.57 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 26.55 | 31.94 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 23.08 | 31.74 |
| HORVU6Hr1G081080.12 | Barley | nucleus | 21.84 | 31.32 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 21.59 | 28.43 |
| VIT_08s0032g01190.t01 | Wine grape | nucleus | 21.59 | 26.52 |
| VIT_08s0007g08250.t01 | Wine grape | nucleus | 22.33 | 25.42 |
| VIT_13s0064g00860.t01 | Wine grape | nucleus | 25.06 | 24.94 |
| Zm00001d026305_P002 | Maize | nucleus | 20.6 | 18.36 |
Protein Annotations
| MapMan:15.5.51.1 | ProteinID:CCB51421 | ProteinID:CCB51421.1 | UniProt:F6HGU5 | EMBL:FN595756 | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001289 | InterPro:NFYA |
| PFAM:PF02045 | PRINTS:PR00616 | PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF8 | SMART:SM00521 |
| TMHMM:TMhelix | UniParc:UPI000210848B | ArrayExpress:VIT_11s0016g01480 | EnsemblPlantsGene:VIT_11s0016g01480 | EnsemblPlants:VIT_11s0016g01480.t01 | SEG:seg |
Description
No Description!
Coordinates
chr11:+:1176254..1181820
Molecular Weight (calculated)
44901.1 Da
IEP (calculated)
8.611
GRAVY (calculated)
-0.457
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMVVVVVGG VCLYWGFEYL FVFWLCVCLQ QSPRKIEREN SLYRERCEGF QGRRHAQLHP NIYIPCFFFF FSHSFIYTIR ADLKLHTVGW QLPESFSKNL
101: SLKVESPPQL YQNMKQLGLQ LQDQDSSSSQ STGQSHQEVS AIGRTNSQDQ CISSESVHGE SCEKRVEGQS QMKPVFFMAN PDVVFNPSQV DYGHSVTHVA
201: YPYADPYHGG LVAAYGPHAV IQPQLVGIAP TRVPLPFDIA EDGPIFVNAK QYHGILRRRQ SRAKMEAQNK LVKARKPYLH ESRHLHALNR VRGSGGRFLS
301: TKKLQEPDST SNAGCHSVSG SGHFHQKGDT TEYEVHQSDT GKFVASTTSS SDVTSVSNSD VLFRQPEHRF SGMSPHMGGA MQGGGGGTYG QWSPAPGCPV
401: RSR
101: SLKVESPPQL YQNMKQLGLQ LQDQDSSSSQ STGQSHQEVS AIGRTNSQDQ CISSESVHGE SCEKRVEGQS QMKPVFFMAN PDVVFNPSQV DYGHSVTHVA
201: YPYADPYHGG LVAAYGPHAV IQPQLVGIAP TRVPLPFDIA EDGPIFVNAK QYHGILRRRQ SRAKMEAQNK LVKARKPYLH ESRHLHALNR VRGSGGRFLS
301: TKKLQEPDST SNAGCHSVSG SGHFHQKGDT TEYEVHQSDT GKFVASTTSS SDVTSVSNSD VLFRQPEHRF SGMSPHMGGA MQGGGGGTYG QWSPAPGCPV
401: RSR
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.