Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G335400.1 | Wheat | nucleus | 98.04 | 98.43 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 97.25 | 97.64 |
| HORVU6Hr1G081080.12 | Barley | nucleus | 85.1 | 77.22 |
| Os02t0776400-01 | Rice | nucleus | 63.14 | 59.63 |
| OQU85816 | Sorghum | nucleus | 65.49 | 54.93 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 61.18 | 53.24 |
| KRH02649 | Soybean | nucleus | 32.55 | 38.97 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 36.86 | 38.52 |
| KRH37469 | Soybean | nucleus | 32.94 | 36.84 |
| KRH19255 | Soybean | nucleus | 33.33 | 36.48 |
| KRH12475 | Soybean | nucleus | 32.55 | 36.4 |
| PGSC0003DMT400055982 | Potato | nucleus | 29.02 | 34.26 |
| TraesCS5B01G047100.2 | Wheat | nucleus | 25.88 | 31.88 |
| Bra030996.1-P | Field mustard | mitochondrion | 25.49 | 30.81 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 35.69 | 30.33 |
| CDY69800 | Canola | nucleus | 27.45 | 30.3 |
| Bra014368.1-P | Field mustard | nucleus | 27.06 | 29.87 |
| CDY26138 | Canola | nucleus | 27.45 | 29.79 |
| CDY56623 | Canola | nucleus | 27.06 | 29.49 |
| Bra037968.1-P | Field mustard | nucleus | 29.02 | 29.02 |
| CDY02477 | Canola | nucleus | 25.49 | 28.51 |
| Bra030899.1-P | Field mustard | nucleus | 26.67 | 27.09 |
| Solyc08g062210.2.1 | Tomato | nucleus | 33.73 | 26.46 |
| CDY48025 | Canola | nucleus | 29.8 | 26.12 |
| CDY51397 | Canola | nucleus | 29.02 | 25.96 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 24.31 | 25.83 |
| Bra008052.1-P | Field mustard | nucleus | 29.41 | 25.77 |
| CDY33084 | Canola | nucleus | 29.41 | 25.08 |
| KRH47551 | Soybean | nucleus | 33.73 | 24.71 |
| AT1G54160.1 | Thale cress | nucleus | 29.8 | 24.68 |
| Bra016031.1-P | Field mustard | nucleus | 30.98 | 24.53 |
| CDX96435 | Canola | nucleus | 30.98 | 24.53 |
| KRH10071 | Soybean | nucleus | 28.24 | 24.24 |
| Bra021527.1-P | Field mustard | nucleus | 29.02 | 24.03 |
| CDY39091 | Canola | nucleus | 29.02 | 24.03 |
| CDX82133 | Canola | nucleus | 29.8 | 23.82 |
| CDY33253 | Canola | nucleus | 28.63 | 23.7 |
| AT3G14020.1 | Thale cress | nucleus | 28.63 | 23.7 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 30.59 | 23.21 |
| KRH06120 | Soybean | nucleus | 28.63 | 22.88 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 36.08 | 22.83 |
| CDX72950 | Canola | nucleus | 30.59 | 22.74 |
| AT1G17590.3 | Thale cress | nucleus | 29.02 | 22.56 |
| AT1G72830.2 | Thale cress | nucleus | 29.41 | 21.99 |
| CDY21741 | Canola | nucleus | 27.45 | 21.74 |
| TraesCS5B01G028500.1 | Wheat | nucleus | 26.67 | 20.06 |
| CDY70458 | Canola | nucleus | 31.76 | 20.0 |
| CDY30854 | Canola | nucleus | 11.37 | 19.86 |
| TraesCS5B01G375500.1 | Wheat | nucleus | 25.1 | 19.81 |
| CDX81837 | Canola | nucleus | 17.65 | 15.1 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G366100.2 | EnsemblPlantsGene:TraesCS6B01G366100 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001289 | InterPro:NFYA |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF10 | PFAM:PF02045 | PFscan:PS51152 | PRINTS:PR00616 | SEG:seg |
| SMART:SM00521 | MapMan:15.5.51.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:638828575..638831686
Molecular Weight (calculated)
27698.4 Da
IEP (calculated)
10.427
GRAVY (calculated)
-0.698
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLPSSSSSS YDPKGDSFGK SVDDHMRSTL TFGDKHSVYA SQNTDYGHPM ACISYPFNDS GSGVWAAYGS RAMFQPLMPG GGASATARVP LPVELAADEP
101: IFVNPKQYNG ILRRRQLRAK LEAQNKLTKN RKPYLHESRH LHAMKRARGS GGRFLNSKQL KQQQQQSGSA CTKAIADGAN SLGSTHLRLG SGAAGDRTNS
201: ASKAMSSQEN SKRVAAPAPA FTMIQAARKD DDFFHHHAHH LSFSGHFGQS SDRYT
101: IFVNPKQYNG ILRRRQLRAK LEAQNKLTKN RKPYLHESRH LHAMKRARGS GGRFLNSKQL KQQQQQSGSA CTKAIADGAN SLGSTHLRLG SGAAGDRTNS
201: ASKAMSSQEN SKRVAAPAPA FTMIQAARKD DDFFHHHAHH LSFSGHFGQS SDRYT
001: MQVFQRKEDS SWGNSMPTTN SNIQGSESFS LTKDMIMSTT QLPAMKHSGL QLQNQDSTSS QSTEEESGGG EVASFGEYKR YGCSIVNNNL SGYIENLGKP
101: IENYTKSITT SSMVSQDSVF PAPTSGQISW SLQCAETSHF NGFLAPEYAS TPTALPHLEM MGLVSSRVPL PHHIQENEPI FVNAKQYHAI LRRRKHRAKL
201: EAQNKLIKCR KPYLHESRHL HALKRARGSG GRFLNTKKLQ ESSNSLCSSQ MANGQNFSMS PHGGGSGIGS SSISPSSNSN CINMFQNPQF RFSGYPSTHH
301: ASALMSGT
101: IENYTKSITT SSMVSQDSVF PAPTSGQISW SLQCAETSHF NGFLAPEYAS TPTALPHLEM MGLVSSRVPL PHHIQENEPI FVNAKQYHAI LRRRKHRAKL
201: EAQNKLIKCR KPYLHESRHL HALKRARGSG GRFLNTKKLQ ESSNSLCSSQ MANGQNFSMS PHGGGSGIGS SSISPSSNSN CINMFQNPQF RFSGYPSTHH
301: ASALMSGT
Arabidopsis Description
NFYA5Nuclear transcription factor Y subunit A-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.