Factsheet for TraesCS5B01G028500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G037800.1	Wheat	nucleus	98.82	97.95
TraesCS5A01G029900.1	Wheat	nucleus	97.64	97.07
HORVU5Hr1G007890.1	Barley	nucleus	93.81	93.26
Os12t0618600-01	Rice	nucleus	67.26	73.31
TraesCS5B01G375500.1	Wheat	nucleus	61.36	64.4
Zm00001d031092_P001	Maize	nucleus	61.65	63.33
OQU79642	Sorghum	plastid	64.31	52.03
Solyc10g081840.1.1	Tomato	nucleus	20.06	44.16
CDY05192	Canola	nucleus	20.94	39.66
VIT_08s0032g01190.t01	Wine grape	nucleus	38.05	39.33
PGSC0003DMT400072322	Potato	nucleus	22.71	39.29
KRH72156	Soybean	nucleus	38.35	38.81
KRH68018	Soybean	nucleus	37.17	38.41
AT5G06510.2	Thale cress	nucleus	29.79	37.55
KRH32866	Soybean	nucleus	35.99	37.31
PGSC0003DMT400055061	Potato	nucleus	33.63	36.66
Solyc01g006930.2.1	Tomato	nucleus	33.04	36.01
KRG96274	Soybean	endoplasmic reticulum, extracellular, vacuole	36.58	35.84
CDX70098	Canola	nucleus	27.14	34.46
Bra009200.1-P	Field mustard	nucleus	27.14	34.46
CDY18809	Canola	nucleus	27.73	34.31
Bra001164.1-P	Field mustard	nucleus	28.32	34.16
CDY14662	Canola	nucleus	27.73	33.45
CDX74133	Canola	nucleus	27.73	33.45
Bra040529.1-P	Field mustard	nucleus	27.73	33.45
CDX98930	Canola	nucleus	25.96	32.96
AT3G05690.2	Thale cress	mitochondrion	30.97	31.63
TraesCS4B01G290400.1	Wheat	nucleus	21.83	30.33
TraesCS5B01G047100.2	Wheat	nucleus	17.4	28.5
TraesCS6B01G366100.2	Wheat	nucleus	20.06	26.67
TraesCS2B01G198700.1	Wheat	nucleus	21.24	24.0

Protein Annotations

MapMan:15.5.51.1	InterPro:CCAAT-binding_factor_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602
InterPro:IPR001289	InterPro:NFYA	PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152
PANTHER:PTHR12632	PANTHER:PTHR12632:SF17	SMART:SM00521	EnsemblPlantsGene:TraesCS5B01G028500	EnsemblPlants:TraesCS5B01G028500.1	SEG:seg

Description

No Description!

Coordinates

chr5B:+:27506505..27509964

Molecular Weight (calculated)

36770.5 Da

IEP (calculated)

9.002

GRAVY (calculated)

-0.517

Length

339 amino acids

Sequence
(BLAST)

001: MMSFKNHHEG FAGQQLLAAA AAAASQVSGG APLPWWVGSQ LLYGEPMGHG KAPPAVPMSM SPPEDACRDG QFQVVPRAQA LLDAVPLPMG ERGIPEALKF
101: SMAHGKGGNS SEHSAPITLQ SPFTEYNDHF ELGLGQSVIS SNYYSDQQYG LLSSYGMRSA SSGRMLIPLN MPADAPIYVN AKQYEGILRR RRARAKAEKE
201: NRLVKARKPY LHESRHLHAM RRARGSGGRF LNTKKETNGK DTGVGSKAMA GNPLMRPAAS LSSEIQHSEQ GNRSSVSSLS GSEVTSLYDH EDVDHYHNFE
301: HLRTHFFTPL PSIMDGEHGA GNPFKWAAAS DGCCNLLKA

Best Arabidopsis Sequence Match ( AT3G05690.1 )
(BLAST)

001: MAMQTVREGL FSAPQTSWWT AFGSQPLAPE SLAGDSDSFA GVKVGSVGET GQRVDKQSNS ATHLAFSLGD VKSPRLVPKP HGATFSMQSP CLELGFSQPP
101: IYTKYPYGEQ QYYGVVSAYG SQSRVMLPLN METEDSTIYV NSKQYHGIIR RRQSRAKAAA VLDQKKLSSR CRKPYMHHSR HLHALRRPRG SGGRFLNTKS
201: QNLENSGTNA KKGDGSMQIQ SQPKPQQSNS QNSEVVHPEN GTMNLSNGLN VSGSEVTSMN YFLSSPVHSL GGMVMPSKWI AAAAAMDNGC CNFKT

Arabidopsis Description

UNE8Nuclear factor Y, subunit A2 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.