Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G289600.1 | Wheat | nucleus | 97.54 | 98.35 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 97.95 | 82.41 |
| EER92762 | Sorghum | nucleus | 75.82 | 74.6 |
| Os03t0174900-01 | Rice | vacuole | 60.66 | 70.81 |
| Zm00001d027874_P004 | Maize | nucleus | 61.89 | 57.41 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 51.23 | 43.4 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 47.13 | 39.52 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 48.36 | 39.33 |
| TraesCS5B01G047100.2 | Wheat | nucleus | 32.79 | 38.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.77 | 38.14 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 49.18 | 37.85 |
| TraesCS6B01G366100.2 | Wheat | nucleus | 38.52 | 36.86 |
| KRH02649 | Soybean | nucleus | 30.74 | 35.21 |
| CDY69800 | Canola | nucleus | 32.79 | 34.63 |
| Bra014368.1-P | Field mustard | nucleus | 32.79 | 34.63 |
| KRH19255 | Soybean | nucleus | 32.79 | 34.33 |
| CDY26138 | Canola | nucleus | 32.79 | 34.04 |
| KRH12475 | Soybean | nucleus | 31.56 | 33.77 |
| Bra037968.1-P | Field mustard | nucleus | 35.25 | 33.73 |
| PGSC0003DMT400055982 | Potato | nucleus | 29.51 | 33.33 |
| CDY02477 | Canola | nucleus | 31.15 | 33.33 |
| CDY56623 | Canola | nucleus | 31.97 | 33.33 |
| KRH37469 | Soybean | nucleus | 30.74 | 32.89 |
| Bra030899.1-P | Field mustard | nucleus | 32.38 | 31.47 |
| Bra030996.1-P | Field mustard | mitochondrion | 26.64 | 30.81 |
| CDY51397 | Canola | nucleus | 35.66 | 30.53 |
| CDY48025 | Canola | nucleus | 35.25 | 29.55 |
| Bra008052.1-P | Field mustard | nucleus | 35.25 | 29.55 |
| KRH10071 | Soybean | nucleus | 35.66 | 29.29 |
| CDY33084 | Canola | nucleus | 35.66 | 29.1 |
| AT1G54160.1 | Thale cress | nucleus | 36.48 | 28.9 |
| Solyc08g062210.2.1 | Tomato | nucleus | 37.7 | 28.31 |
| CDX96435 | Canola | nucleus | 37.3 | 28.26 |
| Bra016031.1-P | Field mustard | nucleus | 37.3 | 28.26 |
| Bra021527.1-P | Field mustard | nucleus | 35.66 | 28.25 |
| CDY39091 | Canola | nucleus | 35.66 | 28.25 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 27.46 | 27.92 |
| CDX82133 | Canola | nucleus | 35.66 | 27.27 |
| KRH06120 | Soybean | nucleus | 35.66 | 27.27 |
| AT3G14020.1 | Thale cress | nucleus | 34.43 | 27.27 |
| CDY33253 | Canola | nucleus | 34.43 | 27.27 |
| CDX72950 | Canola | nucleus | 36.89 | 26.24 |
| KRH47551 | Soybean | nucleus | 36.89 | 25.86 |
| CDY21741 | Canola | nucleus | 34.02 | 25.78 |
| AT1G72830.2 | Thale cress | nucleus | 35.25 | 25.22 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 41.39 | 25.06 |
| AT1G17590.3 | Thale cress | nucleus | 33.61 | 25.0 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 32.79 | 23.81 |
| TraesCS5B01G375500.1 | Wheat | nucleus | 31.15 | 23.53 |
| CDY70458 | Canola | nucleus | 37.7 | 22.72 |
| TraesCS5B01G028500.1 | Wheat | nucleus | 30.33 | 21.83 |
| CDX81837 | Canola | nucleus | 22.54 | 18.46 |
| CDY30854 | Canola | nucleus | 10.25 | 17.12 |
Protein Annotations
| MapMan:15.5.51.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 |
| InterPro:IPR001289 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF16 | SMART:SM00521 | EnsemblPlantsGene:TraesCS4B01G290400 | EnsemblPlants:TraesCS4B01G290400.1 | SEG:seg |
Description
No Description!
Coordinates
chr4B:+:575526003..575527657
Molecular Weight (calculated)
26559.1 Da
IEP (calculated)
9.703
GRAVY (calculated)
-0.856
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRKQNMHEN GTIMIQFGQQ VPNCESSASD SPQEVSGMSE GSFNEQNDQS GNRDGYTKSD EGKMMSALSL GNSETAYTPP KPDRTHPFAI SYPYADPYYG
101: GAVAAYGTHA IMHPQMVGMV PSSRVPLPIE PAAAEEPIYV NAKQYHAILR RRQLRAKLEA ENKLVKSRKP YLHESRHQHA MKRARGTGGR FLNAKEKSEA
201: ASGGGNASAR SGHAGVPTDG GGMFSKHDHT LPSGDFHYRA RGGA
101: GAVAAYGTHA IMHPQMVGMV PSSRVPLPIE PAAAEEPIYV NAKQYHAILR RRQLRAKLEA ENKLVKSRKP YLHESRHQHA MKRARGTGGR FLNAKEKSEA
201: ASGGGNASAR SGHAGVPTDG GGMFSKHDHT LPSGDFHYRA RGGA
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.