Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G289600.1 | Wheat | nucleus | 74.19 | 76.03 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 74.6 | 75.82 |
| Os03t0174900-01 | Rice | vacuole | 60.89 | 72.25 |
| Zm00001d027874_P004 | Maize | nucleus | 73.39 | 69.2 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 75.4 | 64.48 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 51.61 | 44.44 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 50.0 | 42.61 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.02 | 41.35 |
| EER99688 | Sorghum | nucleus | 48.39 | 39.87 |
| EER94699 | Sorghum | nucleus | 47.58 | 38.19 |
| EES17387 | Sorghum | nucleus | 32.66 | 38.03 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 48.39 | 37.85 |
| KRH12475 | Soybean | nucleus | 34.27 | 37.28 |
| KRH19255 | Soybean | nucleus | 34.68 | 36.91 |
| KRH02649 | Soybean | nucleus | 31.45 | 36.62 |
| KRH37469 | Soybean | nucleus | 33.47 | 36.4 |
| CDY02477 | Canola | nucleus | 33.06 | 35.96 |
| CDY56623 | Canola | nucleus | 33.87 | 35.9 |
| CDY69800 | Canola | nucleus | 33.06 | 35.5 |
| Bra014368.1-P | Field mustard | nucleus | 32.66 | 35.06 |
| CDY26138 | Canola | nucleus | 33.06 | 34.89 |
| PGSC0003DMT400055982 | Potato | nucleus | 29.44 | 33.8 |
| Bra037968.1-P | Field mustard | nucleus | 34.68 | 33.73 |
| Bra030899.1-P | Field mustard | nucleus | 33.06 | 32.67 |
| KXG37797 | Sorghum | nucleus | 35.08 | 32.58 |
| KRH10071 | Soybean | nucleus | 37.1 | 30.98 |
| CDY48025 | Canola | nucleus | 36.29 | 30.93 |
| Bra008052.1-P | Field mustard | nucleus | 36.29 | 30.93 |
| OQU85816 | Sorghum | nucleus | 37.9 | 30.92 |
| CDY51397 | Canola | nucleus | 34.68 | 30.18 |
| Bra030996.1-P | Field mustard | mitochondrion | 25.4 | 29.86 |
| CDX96435 | Canola | nucleus | 38.71 | 29.81 |
| Bra016031.1-P | Field mustard | nucleus | 38.71 | 29.81 |
| AT1G54160.1 | Thale cress | nucleus | 36.69 | 29.55 |
| Solyc08g062210.2.1 | Tomato | nucleus | 38.31 | 29.23 |
| KRH06120 | Soybean | nucleus | 37.5 | 29.15 |
| AT3G14020.1 | Thale cress | nucleus | 35.48 | 28.57 |
| CDX82133 | Canola | nucleus | 36.69 | 28.53 |
| CDY33084 | Canola | nucleus | 34.27 | 28.43 |
| Bra021527.1-P | Field mustard | nucleus | 35.08 | 28.25 |
| CDY39091 | Canola | nucleus | 35.08 | 28.25 |
| KRH47551 | Soybean | nucleus | 39.52 | 28.16 |
| CDY33253 | Canola | nucleus | 34.27 | 27.6 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 26.61 | 27.5 |
| CDX72950 | Canola | nucleus | 37.9 | 27.41 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 43.95 | 27.05 |
| AT1G72830.2 | Thale cress | nucleus | 37.1 | 26.98 |
| CDY21741 | Canola | nucleus | 34.27 | 26.4 |
| AT1G17590.3 | Thale cress | nucleus | 34.68 | 26.22 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 33.06 | 24.4 |
| CDY70458 | Canola | nucleus | 39.52 | 24.2 |
| KXG37939 | Sorghum | nucleus | 29.44 | 21.16 |
| CDX81837 | Canola | nucleus | 23.79 | 19.8 |
| CDY30854 | Canola | nucleus | 10.48 | 17.81 |
| OQU88458 | Sorghum | nucleus | 22.98 | 17.65 |
| OQU79642 | Sorghum | plastid | 28.63 | 16.95 |
Protein Annotations
| MapMan:15.5.51.1 | EntrezGene:8059799 | UniProt:C5WVU8 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:EER92762 | ProteinID:EER92762 |
| ProteinID:EER92762.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | InterPro:IPR001289 |
| InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF16 | SMART:SM00521 | EnsemblPlantsGene:SORBI_3001G486000 | unigene:Sbi.7436 | UniParc:UPI00081ADC5B | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:+:75679406..75682840
Molecular Weight (calculated)
27005.6 Da
IEP (calculated)
8.701
GRAVY (calculated)
-0.840
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPPHLTENG TVMIQFGHQM PDYDSPATQS TSESHQEVSG MSEGSLNEHN DHSGNLDGYS KSDENKMMSA LSLGNPETAY AHPKPDRTQS FAISYPYADP
101: YYGGAVAAYG SHAIMHPQLV GMVSSSRVPL PIEPAAEEPI YVNAKQYHAI LRRRQLRAKL EAENKLVKSR KPYLHESRHL HAMKRARGTG GRFLNTKQQP
201: ESPGSGSGGG SSDAQRMPMN GGGLFTKHEH SLPPGDRHHY HARGGGGA
101: YYGGAVAAYG SHAIMHPQLV GMVSSSRVPL PIEPAAEEPI YVNAKQYHAI LRRRQLRAKL EAENKLVKSR KPYLHESRHL HAMKRARGTG GRFLNTKQQP
201: ESPGSGSGGG SSDAQRMPMN GGGLFTKHEH SLPPGDRHHY HARGGGGA
001: MQEFHSSKDS LPCPATSWDN SVFTNSNVQG SSSLTDNNTL SLTMEMKQTG FQMQHYDSSS TQSTGGESYS EVASLSEPTN RYGHNIVVTH LSGYKENPEN
101: PIGSHSISKV SQDSVVLPIE AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLVPSR MPLPHNIPEN EPIFVNAKQY QAILRRRERR AKLEAQNKLI
201: KVRKPYLHES RHLHALKRVR GSGGRFLNTK KHQESNSSLS PPFLIPPHVF KNSPGKFRQM DISRGGVVSS VSTTSCSDIT GNNNDMFQQN PQFRFSGYPS
301: NHHVSVLM
101: PIGSHSISKV SQDSVVLPIE AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLVPSR MPLPHNIPEN EPIFVNAKQY QAILRRRERR AKLEAQNKLI
201: KVRKPYLHES RHLHALKRVR GSGGRFLNTK KHQESNSSLS PPFLIPPHVF KNSPGKFRQM DISRGGVVSS VSTTSCSDIT GNNNDMFQQN PQFRFSGYPS
301: NHHVSVLM
Arabidopsis Description
NFYA6Nuclear transcription factor Y subunit A-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVJ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.