Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82133 | Canola | nucleus | 67.65 | 85.89 |
| CDX96435 | Canola | nucleus | 66.67 | 83.85 |
| CDY48025 | Canola | nucleus | 59.75 | 83.16 |
| CDX72950 | Canola | nucleus | 65.68 | 77.55 |
| AT1G72830.2 | Thale cress | nucleus | 65.19 | 77.42 |
| Zm00001d029489_P002 | Maize | nucleus | 13.33 | 60.0 |
| CDY21741 | Canola | nucleus | 46.67 | 58.7 |
| CDX81837 | Canola | nucleus | 40.0 | 54.36 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 29.14 | 49.17 |
| CDY30854 | Canola | nucleus | 15.31 | 42.47 |
| CDY69800 | Canola | nucleus | 23.7 | 41.56 |
| CDY26138 | Canola | nucleus | 23.7 | 40.85 |
| Os03t0174900-01 | Rice | vacuole | 20.99 | 40.67 |
| EER92762 | Sorghum | nucleus | 24.2 | 39.52 |
| CDY02477 | Canola | nucleus | 22.22 | 39.47 |
| CDY56623 | Canola | nucleus | 22.47 | 38.89 |
| Os07t0608200-01 | Rice | nucleus | 29.14 | 38.82 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 22.72 | 37.7 |
| KRH47551 | Soybean | nucleus | 32.35 | 37.64 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 22.47 | 37.6 |
| CDY02298 | Canola | nucleus | 16.54 | 36.61 |
| CDY51397 | Canola | nucleus | 25.68 | 36.49 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 25.68 | 36.11 |
| CDY09571 | Canola | nucleus | 16.3 | 36.07 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 25.68 | 35.74 |
| KRH06120 | Soybean | nucleus | 28.15 | 35.74 |
| CDY33084 | Canola | nucleus | 25.93 | 35.12 |
| EER94699 | Sorghum | nucleus | 26.17 | 34.3 |
| KRH10071 | Soybean | nucleus | 24.94 | 34.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.93 | 33.65 |
| EER99688 | Sorghum | nucleus | 24.94 | 33.55 |
| CDY05192 | Canola | nucleus | 14.81 | 33.52 |
| CDY39091 | Canola | nucleus | 25.43 | 33.44 |
| CDY33253 | Canola | nucleus | 25.19 | 33.12 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 23.7 | 33.1 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 24.44 | 33.0 |
| CDY31636 | Canola | nucleus | 16.05 | 32.99 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 24.2 | 32.67 |
| CDX84285 | Canola | nucleus | 15.8 | 32.65 |
| PGSC0003DMT400006358 | Potato | nucleus | 22.72 | 32.51 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 25.43 | 32.49 |
| Solyc03g121940.2.1 | Tomato | nucleus | 19.26 | 32.37 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 24.2 | 32.34 |
| CDX78492 | Canola | nucleus | 16.3 | 32.2 |
| TraesCS6B01G366100.2 | Wheat | nucleus | 20.0 | 31.76 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 26.17 | 31.55 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 19.75 | 31.5 |
| Zm00001d006835_P002 | Maize | nucleus | 23.21 | 31.33 |
| Zm00001d022109_P003 | Maize | nucleus | 23.21 | 31.23 |
| Zm00001d027874_P004 | Maize | nucleus | 20.25 | 31.18 |
| CDY37330 | Canola | nucleus | 13.83 | 31.11 |
| TraesCS6A01G335400.1 | Wheat | nucleus | 19.51 | 31.1 |
| Os03t0411100-01 | Rice | nucleus | 24.2 | 30.91 |
| Os02t0776400-01 | Rice | nucleus | 19.51 | 29.26 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 24.2 | 29.25 |
| CDX85686 | Canola | nucleus | 15.8 | 27.12 |
| HORVU6Hr1G081080.12 | Barley | nucleus | 18.77 | 27.05 |
| CDX91161 | Canola | nucleus | 14.57 | 26.94 |
| CDX70480 | Canola | nucleus | 17.04 | 26.64 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 19.26 | 26.62 |
| CDX82223 | Canola | nucleus | 18.27 | 26.43 |
| OQU85816 | Sorghum | nucleus | 19.75 | 26.32 |
| CDY06393 | Canola | nucleus | 19.26 | 26.17 |
| CDY53967 | Canola | nucleus | 18.27 | 26.06 |
| CDX97206 | Canola | nucleus | 18.27 | 25.96 |
| CDY32398 | Canola | nucleus | 19.01 | 25.84 |
| CDY19591 | Canola | nucleus | 17.78 | 24.49 |
| CDY18809 | Canola | nucleus | 16.54 | 24.45 |
| CDY14662 | Canola | nucleus | 16.79 | 24.2 |
| CDX74133 | Canola | nucleus | 16.79 | 24.2 |
| CDX70098 | Canola | nucleus | 15.06 | 22.85 |
| CDX98930 | Canola | nucleus | 15.06 | 22.85 |
| Zm00001d026305_P002 | Maize | nucleus | 18.27 | 16.37 |
Protein Annotations
| MapMan:15.5.51.1 | GO:A0A078JS78 | UniProt:A0A078JS78 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:CDY70458 | ProteinID:CDY70458 |
| ProteinID:CDY70458.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | EnsemblPlantsGene:GSBRNA2T00003651001 |
| InterPro:IPR001289 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF8 | SMART:SM00521 | UniParc:UPI0004EF4788 | SEG:seg | : |
Description
BnaCnng68450DBnaCnng68450D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JS78]
Coordinates
chrLK042178:-:1003..3185
Molecular Weight (calculated)
46097.5 Da
IEP (calculated)
10.287
GRAVY (calculated)
-0.788
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: KWQWWCSWRW WFPSKAKRDR NRHRQRIKRR ITPVQYDTHP LIHLVSFKIS KRQQQSTLFC KDRETCKTNR RFIQLLKRYS SCEDSLLGVM HQMNKKDSTL
101: PYLNTSISWG GVDARPEHMQ TTKQISFQDL DSPSSQSTCQ SYTEVASSGD DNPSIQISFS TKSGSEETQH KGFATHPNSA SMTGVPSIHF APTQANFSFH
201: YADPQIGGLL AATYLPHAPT CHPQMVGMVL GRVPLPVEIT ETEPVFVNAK QYHAIMRRRE QRAKLEAQNK LIKARKPYLH ESRHVHALKR PRGSGGRFLN
301: TKQLLQESEQ TAAKEQERDK LVQQGSKKAN MSRLDAHMLQ HNKDRGSTTS GSDITSVSDG ADIFGHTEFQ LSGFPTTQTN RAMLVHGQSN DMHGGGDLHH
401: FSIHI
101: PYLNTSISWG GVDARPEHMQ TTKQISFQDL DSPSSQSTCQ SYTEVASSGD DNPSIQISFS TKSGSEETQH KGFATHPNSA SMTGVPSIHF APTQANFSFH
201: YADPQIGGLL AATYLPHAPT CHPQMVGMVL GRVPLPVEIT ETEPVFVNAK QYHAIMRRRE QRAKLEAQNK LIKARKPYLH ESRHVHALKR PRGSGGRFLN
301: TKQLLQESEQ TAAKEQERDK LVQQGSKKAN MSRLDAHMLQ HNKDRGSTTS GSDITSVSDG ADIFGHTEFQ LSGFPTTQTN RAMLVHGQSN DMHGGGDLHH
401: FSIHI
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.