Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023378.1-P | Field mustard | nucleus | 96.61 | 95.0 |
| CDX91161 | Canola | nucleus | 70.76 | 76.26 |
| CDX78492 | Canola | nucleus | 61.86 | 71.22 |
| CDX70480 | Canola | nucleus | 73.73 | 67.18 |
| AT5G12840.3 | Thale cress | nucleus | 76.27 | 66.18 |
| CDX97206 | Canola | nucleus | 78.81 | 65.26 |
| CDY53967 | Canola | nucleus | 78.39 | 65.14 |
| KRG98391 | Soybean | nucleus | 51.27 | 35.8 |
| KRH46473 | Soybean | nucleus | 50.42 | 35.42 |
| CDX82223 | Canola | nucleus | 41.95 | 35.36 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 45.34 | 34.97 |
| CDY37330 | Canola | nucleus | 26.27 | 34.44 |
| Solyc11g065700.1.1 | Tomato | nucleus | 43.64 | 34.33 |
| PGSC0003DMT400018959 | Potato | nucleus | 43.64 | 34.33 |
| CDY06393 | Canola | nucleus | 41.95 | 33.22 |
| CDY32398 | Canola | nucleus | 41.1 | 32.55 |
| TraesCS4A01G277300.1 | Wheat | nucleus | 36.44 | 32.33 |
| PGSC0003DMT400027785 | Potato | nucleus | 42.37 | 32.26 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 36.02 | 31.95 |
| Solyc01g008490.2.1 | Tomato | nucleus | 41.95 | 31.73 |
| CDY02298 | Canola | nucleus | 24.58 | 31.69 |
| Os03t0696300-01 | Rice | nucleus | 34.75 | 31.54 |
| CDY19591 | Canola | nucleus | 38.56 | 30.95 |
| KXG37797 | Sorghum | nucleus | 34.75 | 30.71 |
| CDY09571 | Canola | nucleus | 23.73 | 30.6 |
| CDY05192 | Canola | nucleus | 22.88 | 30.17 |
| KRH73967 | Soybean | nucleus | 38.98 | 29.97 |
| Zm00001d033602_P002 | Maize | nucleus | 33.47 | 29.92 |
| KRH14162 | Soybean | nucleus | 38.56 | 29.64 |
| CDX84285 | Canola | nucleus | 23.31 | 28.06 |
| CDY31636 | Canola | nucleus | 22.88 | 27.41 |
| CDY69800 | Canola | nucleus | 26.69 | 27.27 |
| CDY26138 | Canola | nucleus | 27.12 | 27.23 |
| CDY02477 | Canola | nucleus | 25.85 | 26.75 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 33.05 | 26.17 |
| CDY56623 | Canola | nucleus | 25.85 | 26.07 |
| CDY51397 | Canola | nucleus | 30.08 | 24.91 |
| CDY33084 | Canola | nucleus | 30.51 | 24.08 |
| CDX98930 | Canola | nucleus | 26.27 | 23.22 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 31.36 | 23.12 |
| CDY18809 | Canola | nucleus | 26.27 | 22.63 |
| CDX70098 | Canola | nucleus | 25.42 | 22.47 |
| CDY48025 | Canola | nucleus | 27.12 | 21.99 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 33.47 | 21.58 |
| CDX82133 | Canola | nucleus | 27.97 | 20.69 |
| CDX74133 | Canola | nucleus | 24.58 | 20.64 |
| CDY14662 | Canola | nucleus | 24.58 | 20.64 |
| CDX96435 | Canola | nucleus | 27.97 | 20.5 |
| CDX72950 | Canola | nucleus | 29.24 | 20.12 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 20.34 | 20.0 |
| CDY33253 | Canola | nucleus | 24.15 | 18.51 |
| CDY39091 | Canola | nucleus | 24.15 | 18.51 |
| CDY21741 | Canola | nucleus | 24.58 | 18.01 |
| CDY70458 | Canola | nucleus | 27.12 | 15.8 |
| CDY30854 | Canola | nucleus | 9.75 | 15.75 |
| CDX81837 | Canola | nucleus | 15.68 | 12.42 |
Protein Annotations
| MapMan:15.5.51.1 | GO:A0A078D8V6 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:CDX85686 | ProteinID:CDX85686 | ProteinID:CDX85686.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | EnsemblPlantsGene:GSBRNA2T00143425001 | InterPro:IPR001289 |
| InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF14 | SMART:SM00521 | UniParc:UPI0004EEA777 | SEG:seg | : | : |
Description
BnaA02g01270D
Coordinates
chrLK031842:+:1207110..1208482
Molecular Weight (calculated)
26100.3 Da
IEP (calculated)
7.214
GRAVY (calculated)
-1.060
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSKSGGRGN EEEVNQQQPM MMYPDPWWKN NSFGGVLPQE RPSASESNDV HSPSEDDGGP CKDSQAATSP PPPGFLEGKD QTASMDDEQV VQPPELVGHY
101: IACVPNPYQD AYYGGMMGAY GHHQPLGFRP YPGMARERTA LPLDTTQEPV YVNAKQYEGI LRRRKARAKA ELERKVINRK PYLHESRHKH AMKRVRASGG
201: RFAKKSEAEA AEDAAAARRE RSSATNSSGS EQPVDS
101: IACVPNPYQD AYYGGMMGAY GHHQPLGFRP YPGMARERTA LPLDTTQEPV YVNAKQYEGI LRRRKARAKA ELERKVINRK PYLHESRHKH AMKRVRASGG
201: RFAKKSEAEA AEDAAAARRE RSSATNSSGS EQPVDS
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSDNHGMEGN
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.