Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g065700.1.1 | Tomato | nucleus | 97.67 | 97.67 |
| PGSC0003DMT400027785 | Potato | nucleus | 70.0 | 67.74 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 49.0 | 48.04 |
| KRG98391 | Soybean | nucleus | 54.0 | 47.93 |
| KRH46473 | Soybean | nucleus | 53.0 | 47.32 |
| CDX78492 | Canola | nucleus | 32.0 | 46.83 |
| CDX70480 | Canola | nucleus | 38.0 | 44.02 |
| AT5G12840.3 | Thale cress | nucleus | 39.67 | 43.75 |
| Bra006165.1-P | Field mustard | nucleus | 37.0 | 43.7 |
| CDX85686 | Canola | nucleus | 34.33 | 43.64 |
| Bra023378.1-P | Field mustard | nucleus | 34.67 | 43.33 |
| CDX91161 | Canola | nucleus | 31.33 | 42.92 |
| KRH73967 | Soybean | nucleus | 43.0 | 42.02 |
| CDY53967 | Canola | nucleus | 39.33 | 41.55 |
| KRH14162 | Soybean | nucleus | 42.33 | 41.37 |
| CDX97206 | Canola | nucleus | 39.0 | 41.05 |
| Bra008878.1-P | Field mustard | nucleus | 38.67 | 40.99 |
| Bra023913.1-P | Field mustard | nucleus | 24.33 | 40.56 |
| CDY37330 | Canola | nucleus | 24.33 | 40.56 |
| AT3G20910.1 | Thale cress | nucleus | 40.0 | 39.6 |
| CDX82223 | Canola | nucleus | 36.33 | 38.93 |
| CDY32398 | Canola | nucleus | 37.33 | 37.58 |
| CDY06393 | Canola | nucleus | 36.67 | 36.91 |
| Bra031242.1-P | Field mustard | nucleus | 36.0 | 36.61 |
| PGSC0003DMT400017698 | Potato | nucleus | 36.67 | 36.3 |
| Bra001806.1-P | Field mustard | nucleus | 36.0 | 35.06 |
| CDY19591 | Canola | nucleus | 34.33 | 35.03 |
| PGSC0003DMT400030813 | Potato | nucleus | 23.0 | 34.16 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 32.67 | 32.89 |
| PGSC0003DMT400054416 | Potato | nucleus | 23.0 | 32.86 |
| PGSC0003DMT400021053 | Potato | nucleus | 25.0 | 31.25 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 31.33 | 29.38 |
| PGSC0003DMT400006358 | Potato | nucleus | 26.0 | 27.56 |
| PGSC0003DMT400055982 | Potato | nucleus | 19.33 | 26.85 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 32.33 | 26.5 |
| PGSC0003DMT400000740 | Potato | nucleus | 24.67 | 24.58 |
| PGSC0003DMT400072322 | Potato | nucleus | 14.33 | 21.94 |
| PGSC0003DMT400055061 | Potato | nucleus | 21.67 | 20.9 |
Protein Annotations
| EntrezGene:102600754 | MapMan:15.5.51.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001289 |
| UniProt:M1ABF2 | InterPro:NFYA | PFAM:PF02045 | EnsemblPlantsGene:PGSC0003DMG400007350 | PGSC:PGSC0003DMG400007350 | EnsemblPlants:PGSC0003DMT400018959 |
| PRINTS:PR00616 | PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF14 | SMART:SM00521 | UniParc:UPI00029633E1 |
| RefSeq:XP_006361756.1 | RefSeq:XP_006361757.1 | SEG:seg | : | : | : |
Description
YA4 [Source:PGSC_GENE;Acc:PGSC0003DMG400007350]
Coordinates
chr11:-:37858689..37866545
Molecular Weight (calculated)
33157.2 Da
IEP (calculated)
7.292
GRAVY (calculated)
-0.970
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSNSKSTNR EETNAYNVPR STVYPEPWWN SAVYNPVSPG LMRENASDSS SLEQSVDGQS QSDGGINEED DDAPEKSQSI VPLHADGSYG KADQNFQPAA
101: PAIPPRLDGS LAQPQQLELV GHSIACAPNP YVDPYYGGMM TAFGQPLVPP HVLDMHYARM PLPQEMAQEP VYVNAKQYRR ILQRRQSRAK AELEKKQIKG
201: RKPYLHESRH QHALRRVRAS GGRFAKKTDA SKGTGSVSSS GSEPLQFNAA DIQKRHENGR LAELQQSYSN GSSYGNQSTF QESKDEYQSA ESREGVFSGK
101: PAIPPRLDGS LAQPQQLELV GHSIACAPNP YVDPYYGGMM TAFGQPLVPP HVLDMHYARM PLPQEMAQEP VYVNAKQYRR ILQRRQSRAK AELEKKQIKG
201: RKPYLHESRH QHALRRVRAS GGRFAKKTDA SKGTGSVSSS GSEPLQFNAA DIQKRHENGR LAELQQSYSN GSSYGNQSTF QESKDEYQSA ESREGVFSGK
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSDNHGMEGN
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.