Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g008490.2.1 | Tomato | nucleus | 92.9 | 92.31 |
| PGSC0003DMT400018959 | Potato | nucleus | 67.74 | 70.0 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 47.74 | 48.37 |
| CDX78492 | Canola | nucleus | 30.65 | 46.34 |
| KRG98391 | Soybean | nucleus | 50.32 | 46.15 |
| KRH46473 | Soybean | nucleus | 49.35 | 45.54 |
| CDX85686 | Canola | nucleus | 32.26 | 42.37 |
| Bra023378.1-P | Field mustard | nucleus | 32.58 | 42.08 |
| Bra006165.1-P | Field mustard | nucleus | 34.19 | 41.73 |
| CDX91161 | Canola | nucleus | 29.35 | 41.55 |
| AT5G12840.3 | Thale cress | nucleus | 36.13 | 41.18 |
| KRH73967 | Soybean | nucleus | 40.65 | 41.04 |
| CDX70480 | Canola | nucleus | 34.19 | 40.93 |
| KRH14162 | Soybean | nucleus | 40.32 | 40.72 |
| Bra023913.1-P | Field mustard | nucleus | 23.23 | 40.0 |
| CDY37330 | Canola | nucleus | 23.23 | 40.0 |
| CDY53967 | Canola | nucleus | 36.13 | 39.44 |
| CDX97206 | Canola | nucleus | 35.81 | 38.95 |
| CDX82223 | Canola | nucleus | 35.16 | 38.93 |
| Bra008878.1-P | Field mustard | nucleus | 35.48 | 38.87 |
| AT3G20910.1 | Thale cress | nucleus | 37.42 | 38.28 |
| PGSC0003DMT400030813 | Potato | nucleus | 24.52 | 37.62 |
| CDY32398 | Canola | nucleus | 36.13 | 37.58 |
| CDY06393 | Canola | nucleus | 36.13 | 37.58 |
| PGSC0003DMT400017698 | Potato | nucleus | 36.45 | 37.29 |
| Bra031242.1-P | Field mustard | nucleus | 35.16 | 36.95 |
| PGSC0003DMT400054416 | Potato | nucleus | 24.19 | 35.71 |
| CDY19591 | Canola | nucleus | 33.55 | 35.37 |
| Bra001806.1-P | Field mustard | nucleus | 34.84 | 35.06 |
| PGSC0003DMT400021053 | Potato | nucleus | 24.84 | 32.08 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 30.32 | 31.54 |
| PGSC0003DMT400006358 | Potato | nucleus | 26.77 | 29.33 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 30.0 | 29.06 |
| PGSC0003DMT400055982 | Potato | nucleus | 19.03 | 27.31 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 30.97 | 26.23 |
| PGSC0003DMT400072322 | Potato | nucleus | 15.48 | 24.49 |
| PGSC0003DMT400000740 | Potato | nucleus | 21.94 | 22.59 |
| PGSC0003DMT400055061 | Potato | nucleus | 21.94 | 21.86 |
Protein Annotations
| EntrezGene:102595987 | MapMan:15.5.51.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016602 | InterPro:IPR001289 | UniProt:M1AQ62 | InterPro:NFYA | PFAM:PF02045 | EnsemblPlantsGene:PGSC0003DMG400010697 |
| PGSC:PGSC0003DMG400010697 | EnsemblPlants:PGSC0003DMT400027785 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF14 | SMART:SM00521 | UniParc:UPI0002948387 | RefSeq:XP_006366543.1 | : | : |
Description
YA4 [Source:PGSC_GENE;Acc:PGSC0003DMG400010697]
Coordinates
chr1:-:4308774..4314022
Molecular Weight (calculated)
33796.0 Da
IEP (calculated)
7.011
GRAVY (calculated)
-0.948
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSESKSANC EEARTYNVPN STLEPWWNTT GNNPVSLGLM RGSASDSPPP EQAVDGRSQS DGGSNEEDDD APEKSQRTIP MHSDGSYAQV DQNLQPIAST
101: IPPKDDGSIT QPPQLELVAH SMACAPNLYV DPYYGGILAP FGQPMVPSHV LDMHHPRMPL PHEMAQEPVY VNAKQYHGIL RRRESRAKAE LEKKLIKGRK
201: PYLHESRHQH ALKRARASGG RFAKKSDAGT SKGEGSGSAV SLQSVHSSGS EPLLSNAADV PEWHKDRSLA ERQHSYSNGN GYGKQSSFQE SKYQAQSAQV
301: GEGGSSGQRW
101: IPPKDDGSIT QPPQLELVAH SMACAPNLYV DPYYGGILAP FGQPMVPSHV LDMHHPRMPL PHEMAQEPVY VNAKQYHGIL RRRESRAKAE LEKKLIKGRK
201: PYLHESRHQH ALKRARASGG RFAKKSDAGT SKGEGSGSAV SLQSVHSSGS EPLLSNAADV PEWHKDRSLA ERQHSYSNGN GYGKQSSFQE SKYQAQSAQV
301: GEGGSSGQRW
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSDNHGMEGN
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.