Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g079150.1.1 | Tomato | nucleus | 85.83 | 94.06 |
| PGSC0003DMT400030813 | Potato | nucleus | 25.42 | 30.2 |
| Os03t0696300-01 | Rice | nucleus | 32.08 | 29.62 |
| KXG37797 | Sorghum | nucleus | 32.5 | 29.21 |
| PGSC0003DMT400055982 | Potato | nucleus | 26.25 | 29.17 |
| Zm00001d033602_P002 | Maize | nucleus | 31.67 | 28.79 |
| PGSC0003DMT400054416 | Potato | nucleus | 25.0 | 28.57 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 30.42 | 27.44 |
| TraesCS4A01G277300.1 | Wheat | nucleus | 30.0 | 27.07 |
| PGSC0003DMT400072322 | Potato | nucleus | 21.67 | 26.53 |
| PGSC0003DMT400017698 | Potato | nucleus | 32.92 | 26.07 |
| PGSC0003DMT400018959 | Potato | nucleus | 31.25 | 25.0 |
| PGSC0003DMT400027785 | Potato | nucleus | 32.08 | 24.84 |
| PGSC0003DMT400006358 | Potato | nucleus | 28.33 | 24.03 |
| PGSC0003DMT400000740 | Potato | nucleus | 26.25 | 20.93 |
| PGSC0003DMT400055061 | Potato | nucleus | 25.42 | 19.61 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400021053 | EnsemblPlantsGene:PGSC0003DMG400008148 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001289 | InterPro:NFYA |
| PANTHER:PTHR12632 | PFAM:PF02045 | PFscan:PS51152 | PGSC:PGSC0003DMG400008148 | PRINTS:PR00616 | SEG:seg |
| SMART:SM00521 | UniParc:UPI000296FCD2 | UniProt:M1AEI5 | MapMan:15.5.51.1 | : | : |
Description
YA3 [Source:PGSC_GENE;Acc:PGSC0003DMG400008148]
Coordinates
chr10:+:58589643..58595489
Molecular Weight (calculated)
27305.0 Da
IEP (calculated)
9.492
GRAVY (calculated)
-0.981
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MFQKSDGDSK REGKHVEFMP PSMGENLRAA NQFELMAPSS IAFKSYPYSE VPQYSGGNVT IACGEPMVNQ NMERSSAVHH NGRMILPVEV KEEPMYVNAK
101: QYHGILRRRQ LRAKAVLQQK VVKSRKPYLH ESRHRHAMRR ARDGGGRFLN TKKKTQSTTT TNNNTTPSSK GKSSMDSDSS PNYLLNYEHE IGSSNHSNSV
201: EGFQFQSGIH DTTENLQLGC HYQWNLNDNN HCNCMHSEHF
101: QYHGILRRRQ LRAKAVLQQK VVKSRKPYLH ESRHRHAMRR ARDGGGRFLN TKKKTQSTTT TNNNTTPSSK GKSSMDSDSS PNYLLNYEHE IGSSNHSNSV
201: EGFQFQSGIH DTTENLQLGC HYQWNLNDNN HCNCMHSEHF
001: MTSSIHELSD NIGSHEKQEQ RDSHFQPPIP SARNYESIVT SLVYSDPGTT NSMAPGQYPY PDPYYRSIFA PPPQPYTGVH LQLMGVQQQG VPLPSDAVEE
101: PVFVNAKQYH GILRRRQSRA RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK EDEHHEDSSH EEKSNLSAGK SAMAASSGTS
101: PVFVNAKQYH GILRRRQSRA RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK EDEHHEDSSH EEKSNLSAGK SAMAASSGTS
Arabidopsis Description
NFYA7Nuclear transcription factor Y subunit A-7 [Source:UniProtKB/Swiss-Prot;Acc:Q84JP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.