Factsheet for PGSC0003DMT400017698

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g087240.2.1	Tomato	nucleus	94.06	94.06
KRH27472	Soybean	nucleus	37.62	37.62
KRH20817	Soybean	nucleus	36.96	36.84
PGSC0003DMT400018959	Potato	nucleus	36.3	36.67
PGSC0003DMT400030813	Potato	nucleus	24.42	36.63
PGSC0003DMT400027785	Potato	nucleus	37.29	36.45
VIT_13s0064g00860.t01	Wine grape	nucleus	47.19	35.31
PGSC0003DMT400054416	Potato	nucleus	24.42	35.24
PGSC0003DMT400021053	Potato	nucleus	26.07	32.92
GSMUA_Achr4P03600_001	Banana	nucleus	31.02	31.54
GSMUA_Achr3P29730_001	Banana	nucleus	33.0	31.25
GSMUA_Achr4P11090_001	Banana	vacuole	34.98	28.96
PGSC0003DMT400055982	Potato	nucleus	19.8	27.78
PGSC0003DMT400006358	Potato	nucleus	24.75	26.5
PGSC0003DMT400072322	Potato	nucleus	16.5	25.51
PGSC0003DMT400055061	Potato	nucleus	24.75	24.12
PGSC0003DMT400000740	Potato	nucleus	23.1	23.26

Protein Annotations

EntrezGene:102589526	MapMan:15.5.51.1	InterPro:CCAAT-binding_factor_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016602	InterPro:IPR001289	UniProt:M1A9B5	InterPro:NFYA	PFAM:PF02045	EnsemblPlantsGene:PGSC0003DMG400006863
PGSC:PGSC0003DMG400006863	EnsemblPlants:PGSC0003DMT400017698	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632
SMART:SM00521	UniParc:UPI000295F6EA	RefSeq:XP_006345444.1	SEG:seg	:	:

Description

YA3 [Source:PGSC_GENE;Acc:PGSC0003DMG400006863]

Coordinates

chr1:-:65740698..65747725

Molecular Weight (calculated)

33177.6 Da

IEP (calculated)

9.109

GRAVY (calculated)

-0.954

Length

303 amino acids

Sequence
(BLAST)

001: MPTIAKHDGR QLETGLRITS QSTTQMQPWW QGYGDNTMPL ASENAVAQGK SEGGNEEKET KALALESGSD GNNEQYKQHL KHFAPTTAAI MAEQQKELTG
101: HSAMLASYPY PDMQYGGMMT YGAPVHPHLF EIHHARMPLP LDMEEEPVYV NAKQYHGILR RRQIRAKAEL ERKAIKARKP YLHESRHQHA MRRARGSGGR
201: FLNTKKGNDM DCTPEETKKY GATIPTHSGN SSGSGSSDQG GKEGSTVQDM HKGHSHSFAT GNGHGSSVYF AQSTGSEQGN GHYGRGSWNL LVNQASQGAA
301: SSN

Best Arabidopsis Sequence Match ( AT3G20910.1 )
(BLAST)

001: MGIEDMHSKS DSGGNKVDSE VHGTVSSSIN SLNPWHRAAA ACNANSSVEA GDKSSKSIAL ALESNGSKSP SNRDNTVNKE SQVTTSPQSA GDYSDKNQES
101: LHHGITQPPP HPQLVGHTVG WASSNPYQDP YYAGVMGAYG HHPLGFVPYG GMPHSRMPLP PEMAQEPVFV NAKQYQAILR RRQARAKAEL EKKLIKSRKP
201: YLHESRHQHA MRRPRGTGGR FAKKTNTEAS KRKAEEKSNG HVTQSPSSSN SDQGEAWNGD YRTPQGDEMQ SSAYKRREEG ECSGQQWNSL SSNHPSQARL
301: AIK

Arabidopsis Description

NFYA9Nuclear transcription factor Y subunit A-9 [Source:UniProtKB/Swiss-Prot;Acc:Q945M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.