Factsheet for VIT_13s0064g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27472	Soybean	nucleus	37.28	49.84
KRH20817	Soybean	nucleus	36.05	48.03
Solyc01g087240.2.1	Tomato	nucleus	35.56	47.52
PGSC0003DMT400017698	Potato	nucleus	35.31	47.19
VIT_08s0007g08250.t01	Wine grape	nucleus	40.74	46.61
VIT_06s0004g02270.t01	Wine grape	nucleus	33.09	43.79
Os03t0696300-01	Rice	nucleus	27.9	43.46
TraesCS4D01G033700.1	Wheat	nucleus	28.4	43.23
KXG37797	Sorghum	nucleus	28.4	43.07
Zm00001d033602_P002	Maize	nucleus	27.9	42.8
TraesCS4A01G277300.1	Wheat	nucleus	27.9	42.48
VIT_10s0003g04650.t01	Wine grape	nucleus	20.99	40.87
GSMUA_Achr3P29730_001	Banana	nucleus	29.38	37.19
GSMUA_Achr4P11090_001	Banana	vacuole	32.1	35.52
GSMUA_Achr4P03600_001	Banana	nucleus	25.43	34.56
VIT_09s0002g01590.t01	Wine grape	nucleus	21.73	26.19
VIT_08s0032g01190.t01	Wine grape	nucleus	20.74	25.61
VIT_11s0016g01480.t01	Wine grape	endoplasmic reticulum, golgi	24.94	25.06

Protein Annotations

EntrezGene:100248239	wikigene:100248239	MapMan:15.5.51.1	ProteinID:CBI24892	ProteinID:CBI24892.3	InterPro:CCAAT-binding_factor_CS
UniProt:D7T311	EMBL:FN595509	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602
InterPro:IPR001289	EntrezGene:LOC100248239	wikigene:LOC100248239	InterPro:NFYA	PFAM:PF02045	PRINTS:PR00616
ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF14	SMART:SM00521	TIGR:TC59476
UniParc:UPI0001BE22EB	ArrayExpress:VIT_13s0064g00860	EnsemblPlantsGene:VIT_13s0064g00860	EnsemblPlants:VIT_13s0064g00860.t01	unigene:Vvi.12913	RefSeq:XP_002278849
RefSeq:XP_002278849.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:-:22697958..22706910

Molecular Weight (calculated)

44739.5 Da

IEP (calculated)

9.700

GRAVY (calculated)

-0.707

Length

405 amino acids

Sequence
(BLAST)

001: MVWLFLAKSE VNFVAETPWI ATNGHDFLPN SYLLGFIPLL SSHIRFGARG FLFSWWKRIM PTKPKIEDRR IEPGGKSNPS STVYSQPWWH GVGNNAISPA
101: ALGGSPSKST SVEHLNSHIT SNGFQLQANG RLDDGTTFNK GTQPTVALQS DGRNGQEHQH LNPTASSTLP IMSEHLEPNS QMELVGHSIV LTSYPYQDPH
201: NVGIMTSYGP QAMVHPHLFG MHQPRMPLPL EMEEEPVYVN AKQYHGILRR RQSRAKAELE KKAIKVRKPY LHESRHQHAM RRARGCGGRF LNTKKLDNND
301: ANTTAEKGSV SGAALSTQSA SSSGSEHLPT NSSRNLDSSS VQQEEKGRTI QDMLEAHTYS NGNRNGHGLS SAYHSSNGSE GGDCFGQPRE NMQLNTAPHR
401: ALPIK

Best Arabidopsis Sequence Match ( AT5G12840.2 )
(BLAST)

001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSDNHGMEGN
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P

Arabidopsis Description

NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.