Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG98391 | Soybean | nucleus | 59.8 | 54.14 |
| KRH46473 | Soybean | nucleus | 58.82 | 53.57 |
| CDX78492 | Canola | nucleus | 34.97 | 52.2 |
| KRH14162 | Soybean | nucleus | 52.29 | 52.12 |
| KRH73967 | Soybean | nucleus | 51.31 | 51.14 |
| PGSC0003DMT400018959 | Potato | nucleus | 48.04 | 49.0 |
| Solyc11g065700.1.1 | Tomato | nucleus | 48.04 | 49.0 |
| PGSC0003DMT400027785 | Potato | nucleus | 48.37 | 47.74 |
| Solyc01g008490.2.1 | Tomato | nucleus | 48.37 | 47.44 |
| AT5G12840.3 | Thale cress | nucleus | 42.16 | 47.43 |
| Bra023913.1-P | Field mustard | nucleus | 27.78 | 47.22 |
| CDY37330 | Canola | nucleus | 27.78 | 47.22 |
| CDX91161 | Canola | nucleus | 33.66 | 47.03 |
| Bra008878.1-P | Field mustard | nucleus | 42.16 | 45.58 |
| Bra023378.1-P | Field mustard | nucleus | 35.62 | 45.42 |
| CDX85686 | Canola | nucleus | 34.97 | 45.34 |
| CDX97206 | Canola | nucleus | 42.16 | 45.26 |
| CDX70480 | Canola | nucleus | 38.24 | 45.17 |
| CDY53967 | Canola | nucleus | 41.18 | 44.37 |
| Bra006165.1-P | Field mustard | nucleus | 36.6 | 44.09 |
| AT3G20910.1 | Thale cress | nucleus | 42.16 | 42.57 |
| CDX82223 | Canola | nucleus | 38.89 | 42.5 |
| CDY06393 | Canola | nucleus | 41.18 | 42.28 |
| Bra031242.1-P | Field mustard | nucleus | 39.87 | 41.36 |
| CDY32398 | Canola | nucleus | 39.87 | 40.94 |
| CDY19591 | Canola | nucleus | 38.24 | 39.8 |
| VIT_10s0003g04650.t01 | Wine grape | nucleus | 26.47 | 38.94 |
| VIT_08s0007g08250.t01 | Wine grape | nucleus | 44.77 | 38.7 |
| Bra001806.1-P | Field mustard | nucleus | 38.56 | 38.31 |
| Zm00001d033602_P002 | Maize | nucleus | 31.37 | 36.36 |
| Os03t0696300-01 | Rice | nucleus | 30.72 | 36.15 |
| KXG37797 | Sorghum | nucleus | 31.37 | 35.96 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 30.72 | 35.34 |
| TraesCS4A01G277300.1 | Wheat | nucleus | 30.39 | 34.96 |
| VIT_13s0064g00860.t01 | Wine grape | nucleus | 43.79 | 33.09 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 31.05 | 31.88 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 32.68 | 31.25 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 33.66 | 28.14 |
| VIT_08s0032g01190.t01 | Wine grape | nucleus | 24.18 | 22.56 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 28.43 | 21.59 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 23.2 | 21.13 |
Protein Annotations
| EntrezGene:100251945 | wikigene:100251945 | MapMan:15.5.51.1 | EMBL:AM471376 | ProteinID:CAN70549 | ProteinID:CAN70549.1 |
| ProteinID:CBI16364 | ProteinID:CBI16364.3 | UniProt:D7SL36 | EMBL:FN594951 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0010262 |
| GO:GO:0048316 | GO:GO:0048510 | GO:GO:0055046 | InterPro:IPR001289 | EntrezGene:LOC100251945 | wikigene:LOC100251945 |
| InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF14 |
| SMART:SM00521 | UniParc:UPI0001983640 | ArrayExpress:VIT_06s0004g02270 | EnsemblPlantsGene:VIT_06s0004g02270 | EnsemblPlants:VIT_06s0004g02270.t01 | unigene:Vvi.4599 |
| RefSeq:XP_002282778 | RefSeq:XP_002282778.2 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6:+:2680757..2687576
Molecular Weight (calculated)
33492.1 Da
IEP (calculated)
6.999
GRAVY (calculated)
-1.181
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGGNTNNSP SSECPNGGSE SNDGQSHSNG GLNEEDDDSI KESQATASSQ SNGNYGQEHQ NLQHIAPNIQ IGSSECLTQP PQLELVGHSI ACASNPYQDP
101: YYGGMMTAYG PQPLVHPHLL GMHEARMPLP LEMTQDPVYV NPKQYHGILR RRQSRAKAEL EKKLIKVRKP YLHESRHQHA LRRARSSGGR FAKKSAAEAS
201: KHASEEKVTA LGSAPSPQSV SSSGSERLPS DSTETWNSSS RQQEARGPQA HDTHEPPKYK NGSGYYQSPG DSQTTNHSHT SERGEEDQQW KSFSADQGSQ
301: RPHAFQ
101: YYGGMMTAYG PQPLVHPHLL GMHEARMPLP LEMTQDPVYV NPKQYHGILR RRQSRAKAEL EKKLIKVRKP YLHESRHQHA LRRARSSGGR FAKKSAAEAS
201: KHASEEKVTA LGSAPSPQSV SSSGSERLPS DSTETWNSSS RQQEARGPQA HDTHEPPKYK NGSGYYQSPG DSQTTNHSHT SERGEEDQQW KSFSADQGSQ
301: RPHAFQ
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.