Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G277300.1 | Wheat | nucleus | 92.48 | 92.48 |
| Os03t0696300-01 | Rice | nucleus | 72.18 | 73.85 |
| Zm00001d033602_P002 | Maize | nucleus | 70.3 | 70.83 |
| KXG37797 | Sorghum | nucleus | 70.3 | 70.04 |
| CDX78492 | Canola | nucleus | 29.32 | 38.05 |
| TraesCS5D01G052200.2 | Wheat | nucleus | 29.7 | 37.44 |
| Bra023378.1-P | Field mustard | nucleus | 32.71 | 36.25 |
| CDX85686 | Canola | nucleus | 31.95 | 36.02 |
| CDX91161 | Canola | nucleus | 29.32 | 35.62 |
| Bra006165.1-P | Field mustard | nucleus | 33.83 | 35.43 |
| KRH27472 | Soybean | nucleus | 39.1 | 34.32 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 38.35 | 34.23 |
| Bra023913.1-P | Field mustard | nucleus | 22.93 | 33.89 |
| CDY37330 | Canola | nucleus | 22.93 | 33.89 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 40.6 | 33.75 |
| CDX70480 | Canola | nucleus | 32.71 | 33.59 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 30.45 | 33.47 |
| AT5G12840.3 | Thale cress | nucleus | 33.83 | 33.09 |
| VIT_08s0007g08250.t01 | Wine grape | nucleus | 42.48 | 31.92 |
| KRH20817 | Soybean | nucleus | 36.47 | 31.91 |
| CDY53967 | Canola | nucleus | 33.83 | 31.69 |
| CDX97206 | Canola | nucleus | 33.83 | 31.58 |
| Solyc10g079150.1.1 | Tomato | nucleus | 25.94 | 31.51 |
| Bra008878.1-P | Field mustard | nucleus | 33.08 | 31.1 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 35.34 | 30.72 |
| CDX82223 | Canola | nucleus | 32.33 | 30.71 |
| PGSC0003DMT400021053 | Potato | nucleus | 27.44 | 30.42 |
| KRG98391 | Soybean | nucleus | 38.35 | 30.18 |
| KRH46473 | Soybean | nucleus | 37.97 | 30.06 |
| CDY06393 | Canola | nucleus | 33.08 | 29.53 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 40.23 | 29.23 |
| Bra031242.1-P | Field mustard | nucleus | 32.33 | 29.15 |
| CDY32398 | Canola | nucleus | 31.95 | 28.52 |
| VIT_13s0064g00860.t01 | Wine grape | nucleus | 43.23 | 28.4 |
| AT3G20910.1 | Thale cress | nucleus | 32.33 | 28.38 |
| CDY19591 | Canola | nucleus | 31.2 | 28.23 |
| KRH73967 | Soybean | nucleus | 31.95 | 27.69 |
| Bra001806.1-P | Field mustard | nucleus | 31.95 | 27.6 |
| KRH14162 | Soybean | nucleus | 31.58 | 27.36 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 24.06 | 25.2 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 29.7 | 23.58 |
| TraesCS5D01G383000.1 | Wheat | nucleus | 28.57 | 23.38 |
| TraesCS5D01G037800.1 | Wheat | nucleus | 29.32 | 22.81 |
Protein Annotations
| MapMan:15.5.51.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 |
| InterPro:IPR001289 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 |
| PANTHER:PTHR12632 | SMART:SM00521 | EnsemblPlantsGene:TraesCS4D01G033700 | EnsemblPlants:TraesCS4D01G033700.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr4D:+:15425007..15426437
Molecular Weight (calculated)
28687.6 Da
IEP (calculated)
9.546
GRAVY (calculated)
-0.827
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGMGSRPGE SNLVEPRGLP SAGMAMQPWW TGTGFGAVSP AVVAPGSGAG ISLSSNPFGG GAPQGKKKTV DDDPRAESSD DDSPRSGEPK DGSFDEEKQH
101: ATSRMPALAS DYLQPYSQLE LNQPMASAAY PYPDAYYTGM VGPYGAQAVA HFQLPGLTHP RMPLPLEVSE EPVYVNAKQY HGILRRRQSR AKAELERKAI
201: KARKPYLHES RHQHAMRRAR GTGGRFLNTK KDESGGASNG GRTEASKGEQ SSEYLRVPPD LHLRQA
101: ATSRMPALAS DYLQPYSQLE LNQPMASAAY PYPDAYYTGM VGPYGAQAVA HFQLPGLTHP RMPLPLEVSE EPVYVNAKQY HGILRRRQSR AKAELERKAI
201: KARKPYLHES RHQHAMRRAR GTGGRFLNTK KDESGGASNG GRTEASKGEQ SSEYLRVPPD LHLRQA
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSDNHGMEGN
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.