Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G375500.1 | Wheat | nucleus | 94.15 | 94.74 |
| TraesCS5A01G373500.1 | Wheat | nucleus | 94.46 | 94.17 |
| HORVU5Hr1G092700.5 | Barley | nucleus | 93.23 | 77.69 |
| Zm00001d033215_P001 | Maize | nucleus | 64.92 | 65.53 |
| Os03t0647600-01 | Rice | nucleus | 68.31 | 62.71 |
| KXG37939 | Sorghum | nucleus | 65.54 | 61.74 |
| TraesCS5D01G037800.1 | Wheat | nucleus | 63.69 | 60.53 |
| Zm00001d013676_P002 | Maize | nucleus | 62.46 | 59.53 |
| Solyc10g081840.1.1 | Tomato | nucleus | 20.31 | 42.86 |
| CDY05192 | Canola | nucleus | 21.23 | 38.55 |
| PGSC0003DMT400072322 | Potato | nucleus | 22.46 | 37.24 |
| VIT_08s0032g01190.t01 | Wine grape | nucleus | 37.54 | 37.2 |
| AT5G06510.2 | Thale cress | nucleus | 29.85 | 36.06 |
| KRH68018 | Soybean | nucleus | 36.0 | 35.67 |
| KRH72156 | Soybean | nucleus | 36.31 | 35.22 |
| PGSC0003DMT400055061 | Potato | nucleus | 33.23 | 34.73 |
| CDY18809 | Canola | nucleus | 28.62 | 33.94 |
| KRH32866 | Soybean | nucleus | 33.85 | 33.64 |
| Solyc01g006930.2.1 | Tomato | nucleus | 31.69 | 33.12 |
| CDX74133 | Canola | nucleus | 28.62 | 33.1 |
| CDY14662 | Canola | nucleus | 28.62 | 33.1 |
| Bra001164.1-P | Field mustard | nucleus | 28.62 | 33.1 |
| Bra040529.1-P | Field mustard | nucleus | 28.62 | 33.1 |
| Bra009200.1-P | Field mustard | nucleus | 27.08 | 32.96 |
| CDX70098 | Canola | nucleus | 27.08 | 32.96 |
| KRG96274 | Soybean | endoplasmic reticulum, extracellular, vacuole | 35.08 | 32.95 |
| CDX98930 | Canola | nucleus | 25.85 | 31.46 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 23.38 | 31.41 |
| TraesCS5D01G052200.2 | Wheat | nucleus | 18.77 | 28.91 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 23.38 | 28.57 |
| AT3G05690.2 | Thale cress | mitochondrion | 28.92 | 28.31 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 19.38 | 24.8 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 23.08 | 22.39 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G383000.1 | EnsemblPlantsGene:TraesCS5D01G383000 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001289 | InterPro:NFYA |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF17 | PFAM:PF02045 | PFscan:PS51152 | PRINTS:PR00616 | SEG:seg |
| SMART:SM00521 | MapMan:15.5.51.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:452560690..452563141
Molecular Weight (calculated)
34840.2 Da
IEP (calculated)
9.451
GRAVY (calculated)
-0.552
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSFKGHDGF GQASNGGGGG GAPVPWWTVS QMLYGEPGAA LSSSPEPEVR RDGQFQVVPR AQGILDPAPP APKGGAPEVL KFSVFQGNLE SGGNKGEKAL
101: VHSATIALQS PLPEYNGRFE FGPGPSMMSS GYPSADQCYG LLTTYAMKST PGSRLLLPLN ATADAPIYVN AKQYEGILRR RRARAKVERE NQLVKGRKPY
201: LHESRHRHAM RRARGTGGRF LNTKKEGDGK DAPGGGKRAD CTPPTRFATS PSSVIPHSRS SISSLSGSEV SSMYDHDDVD HYNSIEHLRT PFFTPLPIIM
301: DGEHGASAPF KWATAADGCC ELLKA
101: VHSATIALQS PLPEYNGRFE FGPGPSMMSS GYPSADQCYG LLTTYAMKST PGSRLLLPLN ATADAPIYVN AKQYEGILRR RRARAKVERE NQLVKGRKPY
201: LHESRHRHAM RRARGTGGRF LNTKKEGDGK DAPGGGKRAD CTPPTRFATS PSSVIPHSRS SISSLSGSEV SSMYDHDDVD HYNSIEHLRT PFFTPLPIIM
301: DGEHGASAPF KWATAADGCC ELLKA
001: MQMFEGDFIY AVIDLGGEKS SRDVPKPHVA FAMQSACFEF GFAQPMMYTK HPHVEQYYGV VSAYGSQRSS GRVMIPLKME TEEDGTIYVN SKQYHGIIRR
101: RQSRAKAEKL SRCRKPYMHH SRHLHAMRRP RGSGGRFLNT KTADAAKQSK PSNSQSSEVF HPENETINSS REANESNLSD SAVTSMDYFL SSSAYSPGGM
201: VMPIKWNAAA MDIGCCKLNI
101: RQSRAKAEKL SRCRKPYMHH SRHLHAMRRP RGSGGRFLNT KTADAAKQSK PSNSQSSEVF HPENETINSS REANESNLSD SAVTSMDYFL SSSAYSPGGM
201: VMPIKWNAAA MDIGCCKLNI
Arabidopsis Description
NFYA10NF-YA10 [Source:UniProtKB/TrEMBL;Acc:A0A178URE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.