Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G290400.1 | Wheat | nucleus | 98.35 | 97.54 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 97.52 | 81.38 |
| EER92762 | Sorghum | nucleus | 76.03 | 74.19 |
| Os03t0174900-01 | Rice | vacuole | 61.16 | 70.81 |
| Zm00001d027874_P004 | Maize | nucleus | 62.4 | 57.41 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 51.24 | 43.06 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 47.11 | 39.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.76 | 37.82 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 49.17 | 37.54 |
| TraesCS5D01G052200.2 | Wheat | nucleus | 32.64 | 37.44 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 37.19 | 35.43 |
| KRH02649 | Soybean | nucleus | 30.99 | 35.21 |
| Bra014368.1-P | Field mustard | nucleus | 32.64 | 34.2 |
| CDY69800 | Canola | nucleus | 32.64 | 34.2 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 47.11 | 34.03 |
| KRH19255 | Soybean | nucleus | 32.64 | 33.91 |
| KRH12475 | Soybean | nucleus | 31.82 | 33.77 |
| CDY26138 | Canola | nucleus | 32.64 | 33.62 |
| Bra037968.1-P | Field mustard | nucleus | 35.12 | 33.33 |
| CDY56623 | Canola | nucleus | 32.23 | 33.33 |
| CDY02477 | Canola | nucleus | 31.41 | 33.33 |
| KRH37469 | Soybean | nucleus | 30.99 | 32.89 |
| PGSC0003DMT400055982 | Potato | nucleus | 29.34 | 32.87 |
| Bra030899.1-P | Field mustard | nucleus | 32.23 | 31.08 |
| Bra030996.1-P | Field mustard | mitochondrion | 26.86 | 30.81 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 33.47 | 30.45 |
| CDY51397 | Canola | nucleus | 35.54 | 30.18 |
| KRH10071 | Soybean | nucleus | 35.95 | 29.29 |
| CDY48025 | Canola | nucleus | 35.12 | 29.21 |
| Bra008052.1-P | Field mustard | nucleus | 35.12 | 29.21 |
| CDY33084 | Canola | nucleus | 35.54 | 28.76 |
| AT1G54160.1 | Thale cress | nucleus | 36.36 | 28.57 |
| CDY39091 | Canola | nucleus | 35.95 | 28.25 |
| Bra021527.1-P | Field mustard | nucleus | 35.95 | 28.25 |
| Solyc08g062210.2.1 | Tomato | nucleus | 37.6 | 28.0 |
| CDX96435 | Canola | nucleus | 37.19 | 27.95 |
| Bra016031.1-P | Field mustard | nucleus | 37.19 | 27.95 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 27.69 | 27.92 |
| KRH06120 | Soybean | nucleus | 35.95 | 27.27 |
| CDY33253 | Canola | nucleus | 34.71 | 27.27 |
| CDX82133 | Canola | nucleus | 35.54 | 26.96 |
| AT3G14020.1 | Thale cress | nucleus | 34.3 | 26.95 |
| CDX72950 | Canola | nucleus | 36.78 | 25.95 |
| KRH47551 | Soybean | nucleus | 37.19 | 25.86 |
| CDY21741 | Canola | nucleus | 33.88 | 25.47 |
| AT1G72830.2 | Thale cress | nucleus | 35.12 | 24.93 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 41.32 | 24.81 |
| AT1G17590.3 | Thale cress | nucleus | 33.47 | 24.7 |
| TraesCS5D01G383000.1 | Wheat | nucleus | 31.41 | 23.38 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 32.23 | 23.21 |
| CDY70458 | Canola | nucleus | 37.6 | 22.47 |
| TraesCS5D01G037800.1 | Wheat | nucleus | 30.17 | 21.34 |
| CDX81837 | Canola | nucleus | 22.31 | 18.12 |
| CDY30854 | Canola | nucleus | 10.33 | 17.12 |
Protein Annotations
| MapMan:15.5.51.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 |
| InterPro:IPR001289 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF16 | SMART:SM00521 | EnsemblPlantsGene:TraesCS4D01G289600 | EnsemblPlants:TraesCS4D01G289600.1 | SEG:seg |
Description
No Description!
Coordinates
chr4D:-:460712517..460714181
Molecular Weight (calculated)
26407.0 Da
IEP (calculated)
9.667
GRAVY (calculated)
-0.844
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRKQNMHEN GTIMIQFGQQ VPNCESSASD SPQEVSGMSE GSFNEQNDQS GNRDGYTKSD EGKMMSALSL GNSETAYTPP KPDRTHPFAI SYPYADPYYG
101: GAVAAYGAHA IMHPQMVGMV PSSRVPLPIE PAAAEEPIYV NAKQYHAILR RRQLRAKLEA ENKLVKSRKP YLHESRHQHA MKRARGTGGR FLNAKEKSEA
201: SGGGNASARP GYAGVPADGG MFSKHDHTLP SGDFHYRARG GA
101: GAVAAYGAHA IMHPQMVGMV PSSRVPLPIE PAAAEEPIYV NAKQYHAILR RRQLRAKLEA ENKLVKSRKP YLHESRHQHA MKRARGTGGR FLNAKEKSEA
201: SGGGNASARP GYAGVPADGG MFSKHDHTLP SGDFHYRARG GA
001: MGIEDMHSKS DSGGNKVDSE VHGTVSSSIN SLNPWHRAAA ACNANSSVEA GDKSSKSIAL ALESNGSKSP SNRDNTVNKE SQVTTSPQSA GDYSDKNQES
101: LHHGITQPPP HPQLVGHTVG WASSNPYQDP YYAGVMGAYG HHPLGFVPYG GMPHSRMPLP PEMAQEPVFV NAKQYQAILR RRQARAKAEL EKKLIKSRKP
201: YLHESRHQHA MRRPRGTGGR FAKKTNTEAS KRKAEEKSNG HVTQSPSSSN SDQGEAWNGD YRTPQGDEMQ SSAYKRREEG ECSGQQWNSL SSNHPSQARL
301: AIK
101: LHHGITQPPP HPQLVGHTVG WASSNPYQDP YYAGVMGAYG HHPLGFVPYG GMPHSRMPLP PEMAQEPVFV NAKQYQAILR RRQARAKAEL EKKLIKSRKP
201: YLHESRHQHA MRRPRGTGGR FAKKTNTEAS KRKAEEKSNG HVTQSPSSSN SDQGEAWNGD YRTPQGDEMQ SSAYKRREEG ECSGQQWNSL SSNHPSQARL
301: AIK
Arabidopsis Description
NFYA9Nuclear transcription factor Y subunit A-9 [Source:UniProtKB/Swiss-Prot;Acc:Q945M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.