Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029489_P002 | Maize | nucleus | 21.18 | 67.78 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 61.11 | 60.48 |
| Os03t0174900-01 | Rice | vacuole | 38.54 | 53.11 |
| EER92762 | Sorghum | nucleus | 44.44 | 51.61 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 43.06 | 51.24 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 43.4 | 51.23 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 54.17 | 49.21 |
| Os07t0608200-01 | Rice | nucleus | 50.69 | 48.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.31 | 45.51 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 46.88 | 45.0 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 46.53 | 44.22 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 45.14 | 43.33 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 43.4 | 43.1 |
| EER99688 | Sorghum | nucleus | 44.44 | 42.52 |
| Zm00001d006835_P002 | Maize | nucleus | 44.1 | 42.33 |
| Zm00001d022109_P003 | Maize | nucleus | 43.75 | 41.86 |
| Zm00001d027874_P004 | Maize | nucleus | 38.19 | 41.83 |
| EER94699 | Sorghum | nucleus | 44.79 | 41.75 |
| Os03t0411100-01 | Rice | nucleus | 44.79 | 40.69 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 45.83 | 39.4 |
| KRH12475 | Soybean | nucleus | 30.9 | 39.04 |
| KRH02649 | Soybean | nucleus | 28.82 | 38.97 |
| KRH37469 | Soybean | nucleus | 30.21 | 38.16 |
| Bra014368.1-P | Field mustard | nucleus | 30.21 | 37.66 |
| CDY69800 | Canola | nucleus | 30.21 | 37.66 |
| CDY26138 | Canola | nucleus | 30.21 | 37.02 |
| KRH19255 | Soybean | nucleus | 29.86 | 36.91 |
| PGSC0003DMT400055982 | Potato | nucleus | 27.43 | 36.57 |
| Bra037968.1-P | Field mustard | nucleus | 32.29 | 36.47 |
| CDY02477 | Canola | nucleus | 28.82 | 36.4 |
| CDY56623 | Canola | nucleus | 29.17 | 35.9 |
| CDY48025 | Canola | nucleus | 36.11 | 35.74 |
| Bra008052.1-P | Field mustard | nucleus | 36.11 | 35.74 |
| Bra030899.1-P | Field mustard | nucleus | 30.21 | 34.66 |
| GSMUA_Achr4P31650_001 | Banana | nucleus | 27.43 | 34.65 |
| GSMUA_Achr7P01070_001 | Banana | nucleus | 27.78 | 34.19 |
| GSMUA_Achr7P07860_001 | Banana | nucleus | 23.61 | 33.83 |
| Bra016031.1-P | Field mustard | nucleus | 36.81 | 32.92 |
| CDY51397 | Canola | nucleus | 32.29 | 32.63 |
| Solyc08g062210.2.1 | Tomato | nucleus | 36.81 | 32.62 |
| CDX96435 | Canola | nucleus | 36.46 | 32.61 |
| CDX82133 | Canola | nucleus | 36.11 | 32.6 |
| GSMUA_Achr9P10300_001 | Banana | nucleus | 26.39 | 32.48 |
| Bra030996.1-P | Field mustard | mitochondrion | 23.61 | 32.23 |
| CDY33084 | Canola | nucleus | 32.29 | 31.1 |
| KRH47551 | Soybean | nucleus | 37.5 | 31.03 |
| CDX72950 | Canola | nucleus | 36.46 | 30.61 |
| KRH10071 | Soybean | nucleus | 31.25 | 30.3 |
| AT1G72830.2 | Thale cress | nucleus | 35.76 | 30.21 |
| AT3G14020.1 | Thale cress | nucleus | 32.29 | 30.19 |
| AT1G54160.1 | Thale cress | nucleus | 31.94 | 29.87 |
| KRH06120 | Soybean | nucleus | 32.99 | 29.78 |
| AT1G17590.3 | Thale cress | nucleus | 33.68 | 29.57 |
| Bra021527.1-P | Field mustard | nucleus | 31.6 | 29.55 |
| CDY39091 | Canola | nucleus | 31.6 | 29.55 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 40.97 | 29.28 |
| CDY33253 | Canola | nucleus | 30.9 | 28.9 |
| CDY21741 | Canola | nucleus | 32.29 | 28.88 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 33.68 | 28.87 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 23.26 | 27.92 |
| CDY70458 | Canola | nucleus | 36.11 | 25.68 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 27.78 | 25.0 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 25.0 | 24.16 |
| GSMUA_Achr4P28390_001 | Banana | nucleus | 25.35 | 22.67 |
| CDX81837 | Canola | nucleus | 23.26 | 22.48 |
| Zm00001d026305_P002 | Maize | nucleus | 35.07 | 22.35 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 27.78 | 21.86 |
| GSMUA_Achr4P31420_001 | Banana | mitochondrion, nucleus | 24.31 | 20.77 |
| GSMUA_Achr5P02590_001 | Banana | nucleus | 22.57 | 20.06 |
| CDY30854 | Canola | nucleus | 9.72 | 19.18 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P16700_001 | EnsemblPlants:GSMUA_Achr8T16700_001 | EnsemblPlantsGene:GSMUA_Achr8G16700_001 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001289 |
| InterPro:NFYA | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF27 | PFAM:PF02045 | PFscan:PS51152 | PRINTS:PR00616 |
| SEG:seg | SMART:SM00521 | UniParc:UPI0002958450 | UniProt:M0TR23 | MapMan:15.5.51.1 | : |
Description
nuclear transcription factor Y subunit, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G16700_001]
Coordinates
chr8:-:14717002..14721349
Molecular Weight (calculated)
31596.3 Da
IEP (calculated)
9.696
GRAVY (calculated)
-0.760
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MAENGNQLKH LGHQMHNQNS PSTQSTGQPH QEVSETSDCN NHEQHISSQS GVNNTPKKPV ECHMKAVLSL GASEATYAPP KLDCSQPFAC ISYPYADIYY
101: GGIPAVYGPH AIIHPQMAGV ASYARVPLPT EPAAEEPIYV NAKQYSAILR RRQFRARLEA QNKLMKSRKP YLHESRHLHA MKRARGSGGR FLNTKQQQQQ
201: QEDAPPSAIM VCQDAPTSKY LSGGHPTGSS ATLTTSNMMM ASTSGSRTVQ QHQFGFSSSK YRPHATVSVQ GGCSKMQNGS EHRVPPMR
101: GGIPAVYGPH AIIHPQMAGV ASYARVPLPT EPAAEEPIYV NAKQYSAILR RRQFRARLEA QNKLMKSRKP YLHESRHLHA MKRARGSGGR FLNTKQQQQQ
201: QEDAPPSAIM VCQDAPTSKY LSGGHPTGSS ATLTTSNMMM ASTSGSRTVQ QHQFGFSSSK YRPHATVSVQ GGCSKMQNGS EHRVPPMR
001: MQEFHSSKDS LPCPATSWDN SVFTNSNVQG SSSLTDNNTL SLTMEMKQTG FQMQHYDSSS TQSTGGESYS EVASLSEPTN RYGHNIVVTH LSGYKENPEN
101: PIGSHSISKV SQDSVVLPIE AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLVPSR MPLPHNIPEN EPIFVNAKQY QAILRRRERR AKLEAQNKLI
201: KVRKPYLHES RHLHALKRVR GSGGRFLNTK KHQESNSSLS PPFLIPPHVF KNSPGKFRQM DISRGGVVSS VSTTSCSDIT GNNNDMFQQN PQFRFSGYPS
301: NHHVSVLM
101: PIGSHSISKV SQDSVVLPIE AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLVPSR MPLPHNIPEN EPIFVNAKQY QAILRRRERR AKLEAQNKLI
201: KVRKPYLHES RHLHALKRVR GSGGRFLNTK KHQESNSSLS PPFLIPPHVF KNSPGKFRQM DISRGGVVSS VSTTSCSDIT GNNNDMFQQN PQFRFSGYPS
301: NHHVSVLM
Arabidopsis Description
NFYA6Nuclear transcription factor Y subunit A-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVJ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.