Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055982 | Potato | nucleus | 63.33 | 26.39 |
| EER94699 | Sorghum | nucleus | 88.89 | 25.89 |
| KRH02649 | Soybean | nucleus | 61.11 | 25.82 |
| KRH12475 | Soybean | nucleus | 62.22 | 24.56 |
| KRH37469 | Soybean | nucleus | 61.11 | 24.12 |
| CDY02477 | Canola | nucleus | 60.0 | 23.68 |
| KRH19255 | Soybean | nucleus | 61.11 | 23.61 |
| CDY69800 | Canola | nucleus | 58.89 | 22.94 |
| Bra014368.1-P | Field mustard | nucleus | 58.89 | 22.94 |
| CDY26138 | Canola | nucleus | 58.89 | 22.55 |
| Bra030996.1-P | Field mustard | mitochondrion | 52.22 | 22.27 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 57.78 | 21.67 |
| Bra030899.1-P | Field mustard | nucleus | 60.0 | 21.51 |
| Os03t0411100-01 | Rice | nucleus | 75.56 | 21.45 |
| CDY56623 | Canola | nucleus | 55.56 | 21.37 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 67.78 | 21.18 |
| Bra037968.1-P | Field mustard | nucleus | 60.0 | 21.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 71.11 | 20.51 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 65.56 | 20.27 |
| Zm00001d006835_P002 | Maize | nucleus | 66.67 | 20.0 |
| Zm00001d022109_P003 | Maize | nucleus | 66.67 | 19.93 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 64.44 | 19.8 |
| CDY51397 | Canola | nucleus | 60.0 | 18.95 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 66.67 | 18.93 |
| Zm00001d027874_P004 | Maize | nucleus | 54.44 | 18.63 |
| CDY48025 | Canola | nucleus | 60.0 | 18.56 |
| Bra008052.1-P | Field mustard | nucleus | 58.89 | 18.21 |
| AT3G14020.1 | Thale cress | nucleus | 62.22 | 18.18 |
| CDY33084 | Canola | nucleus | 60.0 | 18.06 |
| Zm00001d033602_P002 | Maize | nucleus | 52.22 | 17.8 |
| AT1G54160.1 | Thale cress | nucleus | 60.0 | 17.53 |
| CDY39091 | Canola | nucleus | 60.0 | 17.53 |
| Bra021527.1-P | Field mustard | nucleus | 60.0 | 17.53 |
| Zm00001d041491_P001 | Maize | nucleus | 55.56 | 17.3 |
| CDX82133 | Canola | nucleus | 61.11 | 17.24 |
| Solyc08g062210.2.1 | Tomato | nucleus | 62.22 | 17.23 |
| CDY33253 | Canola | nucleus | 58.89 | 17.21 |
| Bra016031.1-P | Field mustard | nucleus | 58.89 | 16.46 |
| CDX96435 | Canola | nucleus | 58.89 | 16.46 |
| KRH10071 | Soybean | nucleus | 53.33 | 16.16 |
| AT1G17590.3 | Thale cress | nucleus | 58.89 | 16.16 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 57.78 | 15.48 |
| CDX72950 | Canola | nucleus | 58.89 | 15.45 |
| KRH06120 | Soybean | nucleus | 54.44 | 15.36 |
| CDY21741 | Canola | nucleus | 54.44 | 15.22 |
| AT1G72830.2 | Thale cress | nucleus | 56.67 | 14.96 |
| KRH47551 | Soybean | nucleus | 56.67 | 14.66 |
| Zm00001d033215_P001 | Maize | nucleus | 51.11 | 14.29 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 62.22 | 13.9 |
| Zm00001d007882_P001 | Maize | nucleus | 44.44 | 13.61 |
| Zm00001d031092_P001 | Maize | nucleus | 48.89 | 13.33 |
| CDY70458 | Canola | nucleus | 60.0 | 13.33 |
| Zm00001d013676_P002 | Maize | nucleus | 50.0 | 13.2 |
| CDY30854 | Canola | nucleus | 21.11 | 13.01 |
| CDX81837 | Canola | nucleus | 35.56 | 10.74 |
| Zm00001d026305_P002 | Maize | nucleus | 53.33 | 10.62 |
Protein Annotations
| MapMan:15.5.51.1 | UniProt:A0A1D6K5I2 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016602 | InterPro:IPR001289 | InterPro:NFYA | ProteinID:ONL98841.1 | PFAM:PF02045 | PRINTS:PR00616 |
| ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF28 | SMART:SM00521 | UniParc:UPI0002220853 |
| EnsemblPlantsGene:Zm00001d029489 | EnsemblPlants:Zm00001d029489_P002 | EnsemblPlants:Zm00001d029489_T002 | SEG:seg | : | : |
Description
CCAAT-HAP2-transcription factor 23Nuclear transcription factor Y subunit A-8
Coordinates
chr1:+:72880539..72887083
Molecular Weight (calculated)
10063.2 Da
IEP (calculated)
12.385
GRAVY (calculated)
-0.929
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MQVHPQISGA ANTRVPLPVG PAAEEPIFVN AKQYNAILRR RQKRAKLEAQ NKLVKGRKPY LHESRHRHAM KRVRGPGGVS STKRSSRSSS
001: MQEFHSSKDS LPCPATSWDN SVFTNSNVQG SSSLTDNNTL SLTMEMKQTG FQMQHYDSSS TQSTGGESYS EVASLSEPTN RYGHNIVVTH LSGYKENPEN
101: PIGSHSISKV SQDSVVLPIE AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLVPSR MPLPHNIPEN EPIFVNAKQY QAILRRRERR AKLEAQNKLI
201: KVRKPYLHES RHLHALKRVR GSGGRFLNTK KHQESNSSLS PPFLIPPHVF KNSPGKFRQM DISRGGVVSS VSTTSCSDIT GNNNDMFQQN PQFRFSGYPS
301: NHHVSVLM
101: PIGSHSISKV SQDSVVLPIE AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLVPSR MPLPHNIPEN EPIFVNAKQY QAILRRRERR AKLEAQNKLI
201: KVRKPYLHES RHLHALKRVR GSGGRFLNTK KHQESNSSLS PPFLIPPHVF KNSPGKFRQM DISRGGVVSS VSTTSCSDIT GNNNDMFQQN PQFRFSGYPS
301: NHHVSVLM
Arabidopsis Description
NFYA6Nuclear transcription factor Y subunit A-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVJ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.