Factsheet for Zm00001d006835_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99688	Sorghum	nucleus	89.33	89.04
Zm00001d022109_P003	Maize	nucleus	85.33	85.05
Zm00001d029489_P002	Maize	nucleus	20.0	66.67
Os07t0608200-01	Rice	nucleus	60.0	59.21
TraesCS2B01G198700.1	Wheat	nucleus	58.33	58.33
HORVU2Hr1G032130.4	Barley	nucleus	57.67	57.67
TraesCS2A01G172500.1	Wheat	nucleus	58.0	57.43
TraesCS2D01G179600.2	Wheat	nucleus	56.0	50.15
Zm00001d026305_P002	Maize	nucleus	70.0	46.46
GSMUA_Achr2P21730_001	Banana	nucleus	44.0	45.36
GSMUA_Achr8P16700_001	Banana	nucleus	42.33	44.1
GSMUA_AchrUn_...	Banana	nucleus	41.67	40.06
GSMUA_Achr8P30700_001	Banana	nucleus	41.67	39.43
KRH37469	Soybean	nucleus	29.0	38.16
CDY69800	Canola	nucleus	29.33	38.1
Zm00001d027874_P004	Maize	nucleus	33.33	38.02
Bra014368.1-P	Field mustard	nucleus	29.0	37.66
KRH02649	Soybean	nucleus	26.67	37.56
CDY26138	Canola	nucleus	29.33	37.45
KRH12475	Soybean	nucleus	27.67	36.4
KRH19255	Soybean	nucleus	28.0	36.05
CDY56623	Canola	nucleus	27.67	35.47
CDY02477	Canola	nucleus	26.33	34.65
Bra037968.1-P	Field mustard	nucleus	29.33	34.51
PGSC0003DMT400055982	Potato	nucleus	24.0	33.33
Bra030899.1-P	Field mustard	nucleus	27.67	33.07
CDY51397	Canola	nucleus	30.33	31.93
KRH10071	Soybean	nucleus	31.0	31.31
CDY48025	Canola	nucleus	30.33	31.27
Zm00001d018255_P001	Maize	endoplasmic reticulum, extracellular, golgi	30.33	31.06
Bra008052.1-P	Field mustard	nucleus	30.0	30.93
CDY33084	Canola	nucleus	30.33	30.43
AT1G54160.1	Thale cress	nucleus	31.0	30.19
CDX96435	Canola	nucleus	32.0	29.81
KRH47551	Soybean	nucleus	34.33	29.6
CDY39091	Canola	nucleus	30.33	29.55
Zm00001d033602_P002	Maize	nucleus	26.0	29.55
Bra021527.1-P	Field mustard	nucleus	30.33	29.55
Bra016031.1-P	Field mustard	nucleus	31.67	29.5
Bra030996.1-P	Field mustard	mitochondrion	20.33	28.91
CDY33253	Canola	nucleus	29.67	28.9
AT3G14020.1	Thale cress	nucleus	29.67	28.9
CDX72950	Canola	nucleus	33.0	28.86
CDX82133	Canola	nucleus	30.67	28.84
Solyc08g062210.2.1	Tomato	nucleus	31.0	28.62
KRH06120	Soybean	nucleus	30.0	28.21
CDX72947	Canola	nucleus, plasma membrane, plastid	21.67	27.08
AT1G72830.2	Thale cress	nucleus	30.67	26.98
CDY21741	Canola	nucleus	28.67	26.71
AT1G17590.3	Thale cress	nucleus	28.0	25.61
VIT_11s0016g01480.t01	Wine grape	endoplasmic reticulum, golgi	33.67	25.06
VIT_09s0002g01590.t01	Wine grape	nucleus	26.33	23.51
CDY70458	Canola	nucleus	31.33	23.21
Zm00001d041491_P001	Maize	nucleus	21.67	22.49
Zm00001d031092_P001	Maize	nucleus	22.67	20.61
CDY30854	Canola	nucleus	10.0	20.55
CDX81837	Canola	nucleus	20.0	20.13
Zm00001d013676_P002	Maize	nucleus	22.33	19.65
Zm00001d033215_P001	Maize	nucleus	21.0	19.57
Zm00001d007882_P001	Maize	nucleus	17.67	18.03

Protein Annotations

EntrezGene:100194182	MapMan:15.5.51.1	UniProt:B4FHR0	EMBL:BT036648	InterPro:CCAAT-binding_factor_CS	EMBL:EU962352
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602	InterPro:IPR001289	InterPro:NFYA
ProteinID:ONM25188.1	ProteinID:ONM25189.1	ProteinID:ONM25191.1	ProteinID:ONM25193.1	ProteinID:ONM25194.1	PFAM:PF02045
PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF27	SMART:SM00521
UniParc:UPI00017B727D	EnsemblPlantsGene:Zm00001d006835	EnsemblPlants:Zm00001d006835_P002	EnsemblPlants:Zm00001d006835_T002	SEG:seg	:

Description

CCAAT-HAP2-transcription factor 24Nuclear transcription factor Y subunit A-8

Coordinates

chr2:-:217595882..217600202

Molecular Weight (calculated)

32761.2 Da

IEP (calculated)

9.111

GRAVY (calculated)

-0.829

Length

300 amino acids

Sequence
(BLAST)

001: MPVILREMED HSVHPMSKSN HGSLSGNGYE MKHSGHKVCD RDSSSESDRS HQEASAASES SPNEHTSTQS DNDEDHGKDN QDTMKPVLSL GKEGSAFLAP
101: KLHYSPSFAC IPYTSDAYYS AVGVLTGYPP HAIVHPQQND TTNTPGMLPV EPAEEPIYVN AKQYHAILRR RQTRAKLEAQ NKMVKNRKPY LHESRHRHAM
201: KRARGSGGRF LNTKQLQEQN QQYQASSGSL CSKIIANSII SQSGPTCTPS SGTAGASTAG QDRSCLPSVG FRPTTNFSDQ GRGGLKLAVI GMQQRVSTIR

Best Arabidopsis Sequence Match ( AT1G54160.1 )
(BLAST)

001: MQVFQRKEDS SWGNSMPTTN SNIQGSESFS LTKDMIMSTT QLPAMKHSGL QLQNQDSTSS QSTEEESGGG EVASFGEYKR YGCSIVNNNL SGYIENLGKP
101: IENYTKSITT SSMVSQDSVF PAPTSGQISW SLQCAETSHF NGFLAPEYAS TPTALPHLEM MGLVSSRVPL PHHIQENEPI FVNAKQYHAI LRRRKHRAKL
201: EAQNKLIKCR KPYLHESRHL HALKRARGSG GRFLNTKKLQ ESSNSLCSSQ MANGQNFSMS PHGGGSGIGS SSISPSSNSN CINMFQNPQF RFSGYPSTHH
301: ASALMSGT

Arabidopsis Description

NFYA5Nuclear transcription factor Y subunit A-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.