Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006835_P002 | Maize | nucleus | 85.05 | 85.33 |
| Zm00001d029489_P002 | Maize | nucleus | 19.93 | 66.67 |
| Os07t0608200-01 | Rice | nucleus | 59.14 | 58.55 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 58.14 | 58.33 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 58.14 | 57.76 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 56.81 | 57.0 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 56.81 | 51.04 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 43.85 | 45.36 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 41.86 | 43.75 |
| Zm00001d026305_P002 | Maize | nucleus | 63.46 | 42.26 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 42.86 | 40.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.53 | 40.06 |
| Zm00001d027874_P004 | Maize | nucleus | 33.89 | 38.78 |
| KRH37469 | Soybean | nucleus | 29.24 | 38.6 |
| CDY69800 | Canola | nucleus | 29.57 | 38.53 |
| Bra014368.1-P | Field mustard | nucleus | 29.24 | 38.1 |
| CDY26138 | Canola | nucleus | 29.57 | 37.87 |
| KRH12475 | Soybean | nucleus | 28.24 | 37.28 |
| KRH02649 | Soybean | nucleus | 25.58 | 36.15 |
| CDY02477 | Canola | nucleus | 26.91 | 35.53 |
| CDY56623 | Canola | nucleus | 27.57 | 35.47 |
| Bra037968.1-P | Field mustard | nucleus | 29.9 | 35.29 |
| PGSC0003DMT400055982 | Potato | nucleus | 24.92 | 34.72 |
| KRH19255 | Soybean | nucleus | 26.58 | 34.33 |
| Bra030899.1-P | Field mustard | nucleus | 27.91 | 33.47 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 32.23 | 33.11 |
| CDY51397 | Canola | nucleus | 30.9 | 32.63 |
| KRH10071 | Soybean | nucleus | 31.89 | 32.32 |
| Bra008052.1-P | Field mustard | nucleus | 30.23 | 31.27 |
| CDY48025 | Canola | nucleus | 29.9 | 30.93 |
| Bra030996.1-P | Field mustard | mitochondrion | 21.59 | 30.81 |
| CDY33084 | Canola | nucleus | 30.56 | 30.77 |
| AT1G54160.1 | Thale cress | nucleus | 31.23 | 30.52 |
| KRH47551 | Soybean | nucleus | 34.88 | 30.17 |
| Zm00001d033602_P002 | Maize | nucleus | 26.25 | 29.92 |
| CDY39091 | Canola | nucleus | 30.23 | 29.55 |
| Bra021527.1-P | Field mustard | nucleus | 30.23 | 29.55 |
| AT3G14020.1 | Thale cress | nucleus | 30.23 | 29.55 |
| Solyc08g062210.2.1 | Tomato | nucleus | 31.89 | 29.54 |
| Bra016031.1-P | Field mustard | nucleus | 31.56 | 29.5 |
| CDX96435 | Canola | nucleus | 31.56 | 29.5 |
| CDY33253 | Canola | nucleus | 29.57 | 28.9 |
| KRH06120 | Soybean | nucleus | 30.56 | 28.84 |
| CDX82133 | Canola | nucleus | 30.23 | 28.53 |
| CDX72950 | Canola | nucleus | 32.23 | 28.28 |
| CDY21741 | Canola | nucleus | 30.23 | 28.26 |
| AT1G72830.2 | Thale cress | nucleus | 31.23 | 27.57 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 21.26 | 26.67 |
| AT1G17590.3 | Thale cress | nucleus | 28.9 | 26.52 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 28.9 | 25.89 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 33.89 | 25.31 |
| CDY70458 | Canola | nucleus | 31.23 | 23.21 |
| Zm00001d041491_P001 | Maize | nucleus | 21.93 | 22.84 |
| Zm00001d031092_P001 | Maize | nucleus | 23.92 | 21.82 |
| CDX81837 | Canola | nucleus | 20.93 | 21.14 |
| Zm00001d033215_P001 | Maize | nucleus | 22.59 | 21.12 |
| Zm00001d013676_P002 | Maize | nucleus | 23.59 | 20.82 |
| CDY30854 | Canola | nucleus | 9.3 | 19.18 |
| Zm00001d007882_P001 | Maize | nucleus | 17.61 | 18.03 |
Protein Annotations
| EntrezGene:100280919 | MapMan:15.5.51.1 | UniProt:B4FNM1 | EMBL:BT038709 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | InterPro:IPR001289 | InterPro:NFYA | ProteinID:ONM59521.1 |
| ProteinID:ONM59522.1 | ProteinID:ONM59523.1 | ProteinID:ONM59525.1 | ProteinID:ONM59526.1 | ProteinID:ONM59532.1 | PFAM:PF02045 |
| PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF27 | SMART:SM00521 |
| UniParc:UPI00017B6C02 | EnsemblPlantsGene:Zm00001d022109 | EnsemblPlants:Zm00001d022109_P003 | EnsemblPlants:Zm00001d022109_T003 | SEG:seg | : |
Description
CCAAT-HAP2-transcription factor 28Nuclear transcription factor Y subunit A-8
Coordinates
chr7:-:170559870..170564071
Molecular Weight (calculated)
32794.0 Da
IEP (calculated)
7.677
GRAVY (calculated)
-0.872
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MCLLREMEDH YVHPKSKSNH GSLSGNGYEM KNPGHEVCDR DSSSESDRSH PEASAVSESS LDEHTSTQSD NDEDHGKDNQ DTLKPVLSLG KEGSAFLAPK
101: IDYNPSFAYI PYTADAYYGG VGVLTGYAPH TIVHPQQNDT TNSPVMLPAE PAEEEPIYVN AKQYHAILRR RQTRAKLEAQ NKMVKGRKPY LHESRHRHAM
201: KRARGSGGRF LNTKQQPQEQ NQQYQASSGS MCSKTIGNSV ISQSGPICTP SSDAAGASAA SQDRGCLPSV GFRPTANFSE QGGGGSKLVV NGMQQRVSTI
301: R
101: IDYNPSFAYI PYTADAYYGG VGVLTGYAPH TIVHPQQNDT TNSPVMLPAE PAEEEPIYVN AKQYHAILRR RQTRAKLEAQ NKMVKGRKPY LHESRHRHAM
201: KRARGSGGRF LNTKQQPQEQ NQQYQASSGS MCSKTIGNSV ISQSGPICTP SSDAAGASAA SQDRGCLPSV GFRPTANFSE QGGGGSKLVV NGMQQRVSTI
301: R
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.