Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029489_P002 | Maize | nucleus | 18.93 | 66.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 62.46 | 63.46 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 49.21 | 54.17 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 49.21 | 53.61 |
| Os03t0174900-01 | Rice | vacuole | 32.49 | 49.28 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 37.85 | 49.18 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 37.54 | 49.17 |
| EER92762 | Sorghum | nucleus | 37.85 | 48.39 |
| Os07t0608200-01 | Rice | nucleus | 44.48 | 46.38 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 41.01 | 43.33 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 41.32 | 43.23 |
| Zm00001d022109_P003 | Maize | nucleus | 40.69 | 42.86 |
| EER94699 | Sorghum | nucleus | 41.64 | 42.72 |
| Os03t0411100-01 | Rice | nucleus | 42.59 | 42.59 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 39.75 | 42.0 |
| EER99688 | Sorghum | nucleus | 39.75 | 41.86 |
| Zm00001d006835_P002 | Maize | nucleus | 39.43 | 41.67 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 37.54 | 41.03 |
| KRH02649 | Soybean | nucleus | 26.81 | 39.91 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 41.96 | 39.7 |
| KRH12475 | Soybean | nucleus | 28.08 | 39.04 |
| KRH37469 | Soybean | nucleus | 28.08 | 39.04 |
| KRH19255 | Soybean | nucleus | 28.08 | 38.2 |
| Zm00001d027874_P004 | Maize | nucleus | 31.55 | 38.02 |
| PGSC0003DMT400055982 | Potato | nucleus | 25.55 | 37.5 |
| Bra008052.1-P | Field mustard | nucleus | 33.12 | 36.08 |
| CDY48025 | Canola | nucleus | 33.12 | 36.08 |
| GSMUA_Achr7P07860_001 | Banana | nucleus | 22.71 | 35.82 |
| GSMUA_Achr4P31650_001 | Banana | nucleus | 25.24 | 35.09 |
| CDY69800 | Canola | nucleus | 25.55 | 35.06 |
| CDY02477 | Canola | nucleus | 24.92 | 34.65 |
| Bra014368.1-P | Field mustard | nucleus | 25.24 | 34.63 |
| GSMUA_Achr7P01070_001 | Banana | nucleus | 25.55 | 34.62 |
| Bra030996.1-P | Field mustard | mitochondrion | 23.03 | 34.6 |
| Bra037968.1-P | Field mustard | nucleus | 27.76 | 34.51 |
| CDY26138 | Canola | nucleus | 25.55 | 34.47 |
| GSMUA_Achr9P10300_001 | Banana | nucleus | 25.24 | 34.19 |
| CDY56623 | Canola | nucleus | 24.92 | 33.76 |
| CDX82133 | Canola | nucleus | 33.75 | 33.54 |
| Bra030899.1-P | Field mustard | nucleus | 25.55 | 32.27 |
| CDX96435 | Canola | nucleus | 32.18 | 31.68 |
| Bra016031.1-P | Field mustard | nucleus | 32.18 | 31.68 |
| KRH10071 | Soybean | nucleus | 29.65 | 31.65 |
| CDY51397 | Canola | nucleus | 28.08 | 31.23 |
| KRH06120 | Soybean | nucleus | 31.23 | 31.03 |
| KRH47551 | Soybean | nucleus | 34.07 | 31.03 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 32.18 | 30.36 |
| AT1G72830.2 | Thale cress | nucleus | 32.49 | 30.21 |
| AT1G17590.3 | Thale cress | nucleus | 31.23 | 30.18 |
| Solyc08g062210.2.1 | Tomato | nucleus | 30.91 | 30.15 |
| CDX72950 | Canola | nucleus | 32.49 | 30.03 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 38.17 | 30.02 |
| Bra021527.1-P | Field mustard | nucleus | 29.02 | 29.87 |
| CDY39091 | Canola | nucleus | 29.02 | 29.87 |
| CDY33084 | Canola | nucleus | 28.08 | 29.77 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 22.4 | 29.58 |
| CDY33253 | Canola | nucleus | 28.39 | 29.22 |
| AT3G14020.1 | Thale cress | nucleus | 28.08 | 28.9 |
| CDY21741 | Canola | nucleus | 29.34 | 28.88 |
| AT1G54160.1 | Thale cress | nucleus | 27.13 | 27.92 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 24.61 | 26.17 |
| CDY70458 | Canola | nucleus | 32.49 | 25.43 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 24.61 | 24.38 |
| GSMUA_Achr4P28390_001 | Banana | nucleus | 24.29 | 23.91 |
| GSMUA_Achr5P02590_001 | Banana | nucleus | 23.97 | 23.46 |
| CDX81837 | Canola | nucleus | 21.77 | 23.15 |
| GSMUA_Achr4P31420_001 | Banana | mitochondrion, nucleus | 24.61 | 23.15 |
| Zm00001d026305_P002 | Maize | nucleus | 32.81 | 23.01 |
| CDY30854 | Canola | nucleus | 10.41 | 22.6 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 25.87 | 22.4 |
Protein Annotations
| MapMan:15.5.51.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 |
| EnsemblPlantsGene:GSMUA_Achr8G30700_001 | EnsemblPlants:GSMUA_Achr8P30700_001 | EnsemblPlants:GSMUA_Achr8T30700_001 | InterPro:IPR001289 | UniProt:M0TV22 | InterPro:NFYA |
| PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF27 |
| SMART:SM00521 | UniParc:UPI0002966A93 | SEG:seg | : | : | : |
Description
nuclear transcription factor Y subunit, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G30700_001]
Coordinates
chr8:+:32649346..32653233
Molecular Weight (calculated)
34525.0 Da
IEP (calculated)
10.135
GRAVY (calculated)
-0.559
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMDFLGKDG NKVKLLNHSV SEHDSSTQST GQSHQEISGT SEDNVHEQHI SVQSGIDSTL TKSAKDHLKP VISLGASDAA LAPPKWDYSQ SFAPVPYPYA
101: DPYYGGIFAV CGPHAVIQPQ MTGIASPARV PLPLQPAAEE PIYVNAKQYN AILRRRQLRA KLEAQNKLIK NRKPYLHESR HLHAMKRARG SGGRFLNTKQ
201: LQQQQQTQAS AMSGRKQLTG SELRPIGLAA TLIDSETASV STNRSMLAQR DRLGFPLPNL LHSSMGTTSN QGGSSMMSSN SELQVPPMRK EIASATQRPP
301: SQTNAWIPSP SCLLLNA
101: DPYYGGIFAV CGPHAVIQPQ MTGIASPARV PLPLQPAAEE PIYVNAKQYN AILRRRQLRA KLEAQNKLIK NRKPYLHESR HLHAMKRARG SGGRFLNTKQ
201: LQQQQQTQAS AMSGRKQLTG SELRPIGLAA TLIDSETASV STNRSMLAQR DRLGFPLPNL LHSSMGTTSN QGGSSMMSSN SELQVPPMRK EIASATQRPP
301: SQTNAWIPSP SCLLLNA
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.