Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006835_P002 | Maize | nucleus | 89.04 | 89.33 |
| Os07t0608200-01 | Rice | nucleus | 59.8 | 59.21 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 57.14 | 57.33 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 56.81 | 57.0 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 56.81 | 56.44 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 55.15 | 49.55 |
| EER92762 | Sorghum | nucleus | 39.87 | 48.39 |
| EER94699 | Sorghum | nucleus | 49.5 | 48.22 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 44.52 | 46.05 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 42.52 | 44.44 |
| Zm00001d026305_P002 | Maize | nucleus | 66.45 | 44.25 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.52 | 41.03 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 41.86 | 39.75 |
| CDY69800 | Canola | nucleus | 30.23 | 39.39 |
| Bra014368.1-P | Field mustard | nucleus | 29.9 | 38.96 |
| CDY26138 | Canola | nucleus | 30.23 | 38.72 |
| KRH37469 | Soybean | nucleus | 29.24 | 38.6 |
| KRH02649 | Soybean | nucleus | 26.25 | 37.09 |
| KRH12475 | Soybean | nucleus | 27.91 | 36.84 |
| CDY56623 | Canola | nucleus | 28.24 | 36.32 |
| Bra037968.1-P | Field mustard | nucleus | 30.56 | 36.08 |
| CDY02477 | Canola | nucleus | 27.24 | 35.96 |
| KRH19255 | Soybean | nucleus | 27.24 | 35.19 |
| Bra030899.1-P | Field mustard | nucleus | 28.57 | 34.26 |
| PGSC0003DMT400055982 | Potato | nucleus | 24.25 | 33.8 |
| KRH10071 | Soybean | nucleus | 33.22 | 33.67 |
| CDY51397 | Canola | nucleus | 31.56 | 33.33 |
| CDY48025 | Canola | nucleus | 32.23 | 33.33 |
| Bra008052.1-P | Field mustard | nucleus | 31.89 | 32.99 |
| OQU85816 | Sorghum | nucleus | 32.23 | 31.91 |
| CDX96435 | Canola | nucleus | 33.89 | 31.68 |
| AT1G54160.1 | Thale cress | nucleus | 32.23 | 31.49 |
| CDY33084 | Canola | nucleus | 31.23 | 31.44 |
| Bra016031.1-P | Field mustard | nucleus | 33.55 | 31.37 |
| CDY39091 | Canola | nucleus | 31.56 | 30.84 |
| Bra021527.1-P | Field mustard | nucleus | 31.56 | 30.84 |
| Bra030996.1-P | Field mustard | mitochondrion | 21.59 | 30.81 |
| CDX82133 | Canola | nucleus | 32.56 | 30.72 |
| CDX72950 | Canola | nucleus | 34.88 | 30.61 |
| CDY33253 | Canola | nucleus | 30.9 | 30.19 |
| KRH47551 | Soybean | nucleus | 34.88 | 30.17 |
| AT3G14020.1 | Thale cress | nucleus | 30.56 | 29.87 |
| CDY21741 | Canola | nucleus | 31.89 | 29.81 |
| EES17387 | Sorghum | nucleus | 20.93 | 29.58 |
| KRH06120 | Soybean | nucleus | 31.23 | 29.47 |
| Solyc08g062210.2.1 | Tomato | nucleus | 31.56 | 29.23 |
| AT1G72830.2 | Thale cress | nucleus | 32.89 | 29.03 |
| KXG37797 | Sorghum | nucleus | 24.92 | 28.09 |
| AT1G17590.3 | Thale cress | nucleus | 30.56 | 28.05 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 21.93 | 27.5 |
| VIT_11s0016g01480.t01 | Wine grape | endoplasmic reticulum, golgi | 35.22 | 26.3 |
| CDY70458 | Canola | nucleus | 33.55 | 24.94 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 27.57 | 24.7 |
| CDX81837 | Canola | nucleus | 22.59 | 22.82 |
| KXG37939 | Sorghum | nucleus | 25.25 | 22.03 |
| CDY30854 | Canola | nucleus | 9.97 | 20.55 |
| OQU88458 | Sorghum | nucleus | 17.94 | 16.72 |
| OQU79642 | Sorghum | plastid | 22.92 | 16.47 |
Protein Annotations
| MapMan:15.5.51.1 | EntrezGene:8079173 | UniProt:C5XDY5 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:EER99688 | ProteinID:EER99688 |
| ProteinID:EER99688.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | InterPro:IPR001289 |
| InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF27 | SMART:SM00521 | EnsemblPlantsGene:SORBI_3002G370800 | UniParc:UPI0001A83D24 | RefSeq:XP_002463167.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:-:72968418..72971980
Molecular Weight (calculated)
32782.2 Da
IEP (calculated)
8.467
GRAVY (calculated)
-0.814
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVLLREMED HSVHPMSKSN HGSLSGNGYE MKHSGKKVCD KDSSSESDQS HQEASAVSES SPAEHTSTQS DNDEDHGKDN QNTMKPVLSL GKEGSAFLAP
101: KLDYSPSFAY IPYTADACYG GVGVLTGYAP HAIVHPQQND TTNSPGILPV EPTEEEPIYV NAKQYHAILR RRQTRAKLEA QNKMVKGRKP YLHESRHRHA
201: MKRARGSGGR FLNTKQLQEQ NQQYQALSSS MCSKIIGNSL ISQSGPTCTP SSDTAGASTA SQDRSCLPSV GFRPMTNFSE QGGGGSKLIV NSMQQRVSTI
301: R
101: KLDYSPSFAY IPYTADACYG GVGVLTGYAP HAIVHPQQND TTNSPGILPV EPTEEEPIYV NAKQYHAILR RRQTRAKLEA QNKMVKGRKP YLHESRHRHA
201: MKRARGSGGR FLNTKQLQEQ NQQYQALSSS MCSKIIGNSL ISQSGPTCTP SSDTAGASTA SQDRSCLPSV GFRPMTNFSE QGGGGSKLIV NSMQQRVSTI
301: R
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.