Factsheet for Bra016031.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96435	Canola	nucleus	98.76	98.76
Bra008052.1-P	Field mustard	nucleus	73.6	81.44
AT1G72830.2	Thale cress	nucleus	81.06	76.54
Zm00001d029489_P002	Maize	nucleus	16.46	58.89
Bra030996.1-P	Field mustard	mitochondrion	33.23	50.71
Bra014368.1-P	Field mustard	nucleus	30.43	42.42
Bra037968.1-P	Field mustard	nucleus	31.99	40.39
KRH47551	Soybean	nucleus	42.55	39.37
Os03t0174900-01	Rice	vacuole	25.16	38.76
EER92762	Sorghum	nucleus	29.81	38.71
KRH06120	Soybean	nucleus	36.96	37.3
TraesCS4B01G290400.1	Wheat	nucleus	28.26	37.3
TraesCS4D01G289600.1	Wheat	nucleus	27.95	37.19
Os07t0608200-01	Rice	nucleus	35.09	37.17
Bra021527.1-P	Field mustard	nucleus	35.4	37.01
GSMUA_Achr8P16700_001	Banana	nucleus	32.92	36.81
GSMUA_Achr2P21730_001	Banana	nucleus	32.92	36.43
KRH10071	Soybean	nucleus	33.54	36.36
Bra030899.1-P	Field mustard	nucleus	28.26	36.26
Bra032395.1-P	Field mustard	nucleus	20.5	36.07
EER99688	Sorghum	nucleus	31.37	33.55
HORVU2Hr1G032130.4	Barley	nucleus	30.75	33.0
PGSC0003DMT400006358	Potato	nucleus	28.88	32.86
Bra005397.1-P	Field mustard	nucleus	19.88	32.49
GSMUA_AchrUn_...	Banana	nucleus	31.37	32.37
GSMUA_Achr8P30700_001	Banana	nucleus	31.68	32.18
VIT_09s0002g01590.t01	Wine grape	nucleus	33.54	32.14
EER94699	Sorghum	nucleus	30.75	32.04
TraesCS2A01G172500.1	Wheat	nucleus	30.12	32.01
TraesCS2B01G198700.1	Wheat	nucleus	29.81	32.0
Zm00001d006835_P002	Maize	nucleus	29.5	31.67
Zm00001d022109_P003	Maize	nucleus	29.5	31.56
Solyc03g121940.2.1	Tomato	nucleus	23.6	31.54
HORVU4Hr1G075830.4	Barley	nucleus	28.26	31.38
Zm00001d027874_P004	Maize	nucleus	25.47	31.18
Bra023913.1-P	Field mustard	nucleus	17.39	31.11
TraesCS6B01G366100.2	Wheat	nucleus	24.53	30.98
Os03t0411100-01	Rice	nucleus	30.43	30.91
TraesCS6D01G315300.1	Wheat	nucleus	24.22	30.71
TraesCS6A01G335400.1	Wheat	nucleus	23.91	30.32
Os02t0776400-01	Rice	nucleus	24.53	29.26
TraesCS2D01G179600.2	Wheat	nucleus	30.12	28.96
Bra006165.1-P	Field mustard	nucleus	22.36	28.35
Bra023378.1-P	Field mustard	nucleus	20.19	27.08
HORVU6Hr1G081080.12	Barley	nucleus	22.67	25.98
Zm00001d018255_P001	Maize	endoplasmic reticulum, extracellular, golgi	23.6	25.94
OQU85816	Sorghum	nucleus	24.22	25.66
Bra008878.1-P	Field mustard	nucleus	22.36	25.44
Bra031242.1-P	Field mustard	nucleus	22.98	25.08
Bra040529.1-P	Field mustard	nucleus	21.43	24.56
Bra001164.1-P	Field mustard	nucleus	21.43	24.56
Bra001806.1-P	Field mustard	nucleus	23.29	24.35
Bra009200.1-P	Field mustard	nucleus	20.19	24.34
Zm00001d026305_P002	Maize	nucleus	22.98	16.37

Protein Annotations

MapMan:15.5.51.1	EnsemblPlantsGene:Bra016031	EnsemblPlants:Bra016031.1	EnsemblPlants:Bra016031.1-P	InterPro:CCAAT-binding_factor_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016602	InterPro:IPR001289	UniProt:M4DHQ4	InterPro:NFYA
PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF8
SMART:SM00521	UniParc:UPI0002541C52	:	:	:	:

Description

AT1G72830 (E=3e-136) HAP2C, ATHAP2C, NF-YA3 | NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3); transcription factor

Coordinates

chrA07:-:19753408..19754773

Molecular Weight (calculated)

35653.0 Da

IEP (calculated)

9.934

GRAVY (calculated)

-0.710

Length

322 amino acids

Sequence
(BLAST)

001: MSKKGSTLPY LNTSISWGGM IPNDPLSLKV VDARTEHMHT TKQISFQDQD SPSTQSTCQS YTEVASSGDH NSSRQISFST KSGPEETQRK VSATHTKSGA
101: MTGFPNMHFA PTQANFSFHY ADPQYGGLLA TPYLPHAPTC NPQMVGMVPG RVALPVEITE AEPVFVNAKQ YHAIMRRRQQ RAKLEAQNKL IKARKPYLHE
201: SRHVHALKRP RGSGGRFLNT KKLLQESEQV AAKEQERDKS VQQANMSRFK AHMLQHNKDR GGSTTSGSDV TCVSDGADIF GHTEFQFSGF PIPTQTNRAM
301: LVHGQSNDMH GGGELHHFSV HI

Best Arabidopsis Sequence Match ( AT1G72830.1 )
(BLAST)

001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI

Arabidopsis Description

HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.