Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra001615.1-P | |
| Bra012532.1-P | |
| Bra013423.1-P | |
| Bra017974.1-P | |
| Bra021147.1-P | |
| Bra027199.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31636 | Canola | nucleus | 100.0 | 100.0 |
| CDX84285 | Canola | nucleus | 97.97 | 98.47 |
| AT2G34720.1 | Thale cress | nucleus | 88.83 | 88.38 |
| Bra032395.1-P | Field mustard | nucleus | 59.9 | 64.48 |
| VIT_10s0003g04650.t01 | Wine grape | nucleus | 51.78 | 49.04 |
| PGSC0003DMT400030813 | Potato | nucleus | 47.21 | 46.04 |
| KRH42997 | Soybean | nucleus | 47.72 | 45.63 |
| KRH11777 | Soybean | nucleus | 47.21 | 45.37 |
| Solyc02g069860.2.1 | Tomato | nucleus | 47.21 | 44.71 |
| KRH59113 | Soybean | nucleus | 48.22 | 43.78 |
| KRH36784 | Soybean | nucleus | 48.22 | 43.38 |
| PGSC0003DMT400054416 | Potato | nucleus | 45.69 | 42.86 |
| HORVU0Hr1G010230.1 | Barley | nucleus | 32.99 | 40.88 |
| GSMUA_Achr7P01070_001 | Banana | nucleus | 44.67 | 37.61 |
| GSMUA_Achr4P31650_001 | Banana | nucleus | 42.64 | 36.84 |
| GSMUA_Achr9P10300_001 | Banana | nucleus | 43.15 | 36.32 |
| Os08t0196700-01 | Rice | nucleus | 35.53 | 36.27 |
| TraesCS5A01G043300.2 | Wheat | nucleus | 38.07 | 35.71 |
| TraesCS5D01G052200.2 | Wheat | nucleus | 38.07 | 35.55 |
| TraesCS5B01G047100.2 | Wheat | nucleus | 37.06 | 35.27 |
| EES17387 | Sorghum | nucleus | 38.07 | 35.21 |
| HORVU5Hr1G010600.10 | Barley | nucleus | 38.07 | 35.05 |
| Os12t0613000-01 | Rice | nucleus | 37.56 | 34.1 |
| Bra023913.1-P | Field mustard | nucleus | 25.89 | 28.33 |
| Bra014368.1-P | Field mustard | nucleus | 29.95 | 25.54 |
| Zm00001d041491_P001 | Maize | nucleus | 36.04 | 24.57 |
| Bra037968.1-P | Field mustard | nucleus | 31.47 | 24.31 |
| Bra030996.1-P | Field mustard | mitochondrion | 24.87 | 23.22 |
| Bra008052.1-P | Field mustard | nucleus | 34.01 | 23.02 |
| Bra023378.1-P | Field mustard | nucleus | 27.92 | 22.92 |
| Bra030899.1-P | Field mustard | nucleus | 28.93 | 22.71 |
| Bra006165.1-P | Field mustard | nucleus | 28.93 | 22.44 |
| Bra031242.1-P | Field mustard | nucleus | 30.96 | 20.68 |
| Bra008878.1-P | Field mustard | nucleus | 29.44 | 20.49 |
| Bra021527.1-P | Field mustard | nucleus | 31.98 | 20.45 |
| Bra016031.1-P | Field mustard | nucleus | 32.49 | 19.88 |
| Bra040529.1-P | Field mustard | nucleus | 27.41 | 19.22 |
| Bra001164.1-P | Field mustard | nucleus | 27.41 | 19.22 |
| Bra009200.1-P | Field mustard | nucleus | 25.89 | 19.1 |
| Bra001806.1-P | Field mustard | nucleus | 29.44 | 18.83 |
Protein Annotations
| MapMan:15.5.51.1 | EnsemblPlantsGene:Bra005397 | EnsemblPlants:Bra005397.1 | EnsemblPlants:Bra005397.1-P | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | GO:GO:0045892 | GO:GO:0048510 | InterPro:IPR001289 |
| UniProt:M4CMF9 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF29 | SMART:SM00521 | UniParc:UPI0002548000 | SEG:seg | : |
Description
AT2G34720 (E=4e-086) NF-YA4 | NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4); specific transcriptional repressor/ transcription factor
Coordinates
chrA05:+:5228665..5229932
Molecular Weight (calculated)
22199.0 Da
IEP (calculated)
8.780
GRAVY (calculated)
-1.024
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSVHELSD NNESHKKQER PDSQTPPPVP SGPCSESIDT SSVYSEPMAH GLYPYPDPYY RSVFAHQAYL PHPFPGVQMQ LMGMHQQVVP LQCDAVEEPV
101: FVNAKQYHGI LRRRQSRAKL EARNRAIKSK KPYMHESRHL HAINRPRGCG GRFLNAKKKN GDRKEEEEEA TSDENTSEAS SSIRSEKAAM GPNVSRS
101: FVNAKQYHGI LRRRQSRAKL EARNRAIKSK KPYMHESRHL HAINRPRGCG GRFLNAKKKN GDRKEEEEEA TSDENTSEAS SSIRSEKAAM GPNVSRS
001: MTSSVHELSD NNESHAKKER PDSQTRPQVP SGRSSESIDT NSVYSEPMAH GLYPYPDPYY RSVFAQQAYL PHPYPGVQLQ LMGMQQPGVP LQCDAVEEPV
101: FVNAKQYHGI LRRRQSRAKL EARNRAIKAK KPYMHESRHL HAIRRPRGCG GRFLNAKKEN GDHKEEEEAT SDENTSEASS SLRSEKLAMA TSGPNGRS
101: FVNAKQYHGI LRRRQSRAKL EARNRAIKAK KPYMHESRHL HAIRRPRGCG GRFLNAKKEN GDHKEEEEAT SDENTSEASS SLRSEKLAMA TSGPNGRS
Arabidopsis Description
NFYA4Nuclear transcription factor Y subunit A-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY64]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.