CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89416
KRH11729
KRH16959
KRH36722
KRH50476
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34720.1	KRH16959	AT3G49580.1	21798944
AT2G34720.1	KRH53667	AT3G49580.1	21798944
AT2G34720.1	KRH64261	AT3G49580.1	21798944
AT2G34720.1	KRG89416	AT4G19700.1	21798944
AT2G34720.1	KRH11729	AT4G19700.1	21798944
AT2G34720.1	KRH36722	AT4G19700.1	21798944
AT2G34720.1	KRH50476	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42997	Soybean	nucleus	88.02	92.72
KRH11777	Soybean	nucleus	73.27	77.56
KRH36784	Soybean	nucleus	76.5	75.8
VIT_10s0003g04650.t01	Wine grape	nucleus	65.9	68.75
PGSC0003DMT400030813	Potato	nucleus	56.68	60.89
Solyc02g069860.2.1	Tomato	nucleus	58.06	60.58
PGSC0003DMT400054416	Potato	nucleus	57.14	59.05
AT1G30500.2	Thale cress	nucleus	48.85	55.79
Bra032395.1-P	Field mustard	nucleus	45.62	54.1
CDY02298	Canola	nucleus	45.16	53.55
CDY09571	Canola	nucleus	44.7	53.01
AT2G34720.1	Thale cress	nucleus	45.62	50.0
CDX84285	Canola	nucleus	43.78	48.47
Bra005397.1-P	Field mustard	nucleus	43.78	48.22
CDY31636	Canola	nucleus	43.78	48.22
HORVU0Hr1G010230.1	Barley	nucleus	35.02	47.8
GSMUA_Achr7P01070_001	Banana	nucleus	48.39	44.87
Os08t0196700-01	Rice	nucleus	38.25	43.01
GSMUA_Achr9P10300_001	Banana	nucleus	45.16	41.88
GSMUA_Achr4P31650_001	Banana	nucleus	43.78	41.67
TraesCS5A01G043300.2	Wheat	nucleus	40.09	41.43
TraesCS5B01G047100.2	Wheat	nucleus	39.17	41.06
EES17387	Sorghum	nucleus	40.09	40.85
TraesCS5D01G052200.2	Wheat	nucleus	39.63	40.76
HORVU5Hr1G010600.10	Barley	nucleus	40.09	40.65
Os12t0613000-01	Rice	nucleus	38.71	38.71
KRH02649	Soybean	nucleus	29.95	30.52
Zm00001d041491_P001	Maize	nucleus	38.71	29.07
KRH37469	Soybean	nucleus	29.95	28.51
KRH12475	Soybean	nucleus	29.95	28.51
KRH19255	Soybean	nucleus	30.41	28.33
KRH20817	Soybean	nucleus	39.17	27.96
KRH27472	Soybean	nucleus	38.25	27.39
KRG98391	Soybean	nucleus	35.48	22.78
KRH46473	Soybean	nucleus	35.02	22.62
KRH72156	Soybean	nucleus	34.1	22.09
KRH32866	Soybean	nucleus	32.72	21.71
KRH14162	Soybean	nucleus	29.95	21.17
KRH06120	Soybean	nucleus	30.88	21.0
KRH10071	Soybean	nucleus	28.11	20.54
KRH73967	Soybean	nucleus	29.03	20.52
KRH68018	Soybean	nucleus	30.88	20.43
KRH47551	Soybean	nucleus	31.8	19.83
KRG96274	Soybean	endoplasmic reticulum, extracellular, vacuole	29.03	18.21

Protein Annotations

EntrezGene:100805791	MapMan:15.5.51.1	EMBL:ACUP02003299	InterPro:CCAAT-binding_factor_CS	EnsemblPlantsGene:GLYMA_05G166100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016602	UniProt:I1K472	InterPro:IPR001289	EnsemblPlants:KRH59113
ProteinID:KRH59113	ProteinID:KRH59113.1	InterPro:NFYA	PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686
PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF29	SMART:SM00521	UniParc:UPI00023C4C4A	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:35663621..35668591

Molecular Weight (calculated)

24272.2 Da

IEP (calculated)

9.174

GRAVY (calculated)

-0.959

Length

217 amino acids

Sequence
(BLAST)

001: MVWTVLRASR NMTSAHDLTD NEDDGQQQSE SPMQPPSVNG ISDPGISTQN VNVQYAAPGQ LGTGHAMVPH VYPYPDPYYR SIFAPYDTQP YPPQAYSGQP
101: MVHLQLMGIQ QAGVPLPTDA VEEPVFVNAK QYHGILRRRQ YRAKAESENK IIRNRKPYLH ESRHKHALTR PRGCGGRFLN SKKDKNQNDD VASADKSQSN
201: ININSNKNDQ TSSDRAS

Best Arabidopsis Sequence Match ( AT1G30500.2 )
(BLAST)

001: MTSSIHELSD NIGSHEKQEQ RDSHFQPPIP SARNYESIVT SLVYSDPGTT NSMAPGQYPY PDPYYRSIFA PPPQPYTGVH LQLMGVQQQG VPLPSDAVEE
101: PVFVNAKQYH GILRRRQSRA RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK EDEHHEDSSH EEKSNLSAGK SAMAASSGTS

Arabidopsis Description

NFYA7Nuclear transcription factor Y subunit A-7 [Source:UniProtKB/Swiss-Prot;Acc:Q84JP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.