CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20817	Soybean	nucleus	89.77	89.47
KRH11777	Soybean	nucleus	28.05	41.46
KRH42997	Soybean	nucleus	27.39	40.29
TraesCS4A01G277300.1	Wheat	nucleus	35.31	40.23
Os03t0696300-01	Rice	nucleus	33.66	39.23
TraesCS4D01G033700.1	Wheat	nucleus	34.32	39.1
KRH36784	Soybean	nucleus	28.05	38.81
KRH59113	Soybean	nucleus	27.39	38.25
Solyc01g087240.2.1	Tomato	nucleus	37.62	37.62
PGSC0003DMT400017698	Potato	nucleus	37.62	37.62
VIT_13s0064g00860.t01	Wine grape	nucleus	49.84	37.28
KRG98391	Soybean	nucleus	41.58	37.28
KRH46473	Soybean	nucleus	40.92	36.9
Zm00001d033602_P002	Maize	nucleus	32.01	36.74
KXG37797	Sorghum	nucleus	32.34	36.7
KRH73967	Soybean	nucleus	35.64	35.18
KRH14162	Soybean	nucleus	35.31	34.85
GSMUA_Achr4P03600_001	Banana	nucleus	32.67	33.22
GSMUA_Achr3P29730_001	Banana	nucleus	34.65	32.81
KRH02649	Soybean	nucleus	22.11	31.46
KRH37469	Soybean	nucleus	23.43	31.14
KRH12475	Soybean	nucleus	23.1	30.7
KRH19255	Soybean	nucleus	22.77	29.61
GSMUA_Achr4P11090_001	Banana	vacuole	34.65	28.69
KRH10071	Soybean	nucleus	24.75	25.25
KRH72156	Soybean	nucleus	27.72	25.07
KRH68018	Soybean	nucleus	26.73	24.7
KRH06120	Soybean	nucleus	25.74	24.45
KRH47551	Soybean	nucleus	27.06	23.56
KRH32866	Soybean	nucleus	25.08	23.24
KRG96274	Soybean	endoplasmic reticulum, extracellular, vacuole	25.74	22.54

Protein Annotations

EntrezGene:100782085	MapMan:15.5.51.1	UniProt:A0A0R0H9K2	EMBL:ACUP02007805	InterPro:CCAAT-binding_factor_CS	EnsemblPlantsGene:GLYMA_12G236800
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602	InterPro:IPR001289	ProteinID:KRH27471.1
EnsemblPlants:KRH27472	ProteinID:KRH27472	ProteinID:KRH27472.1	ProteinID:KRH27473.1	InterPro:NFYA	PFAM:PF02045
PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	SMART:SM00521	UniParc:UPI000152A17E
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:39555181..39561622

Molecular Weight (calculated)

34064.8 Da

IEP (calculated)

9.961

GRAVY (calculated)

-0.987

Length

303 amino acids

Sequence
(BLAST)

001: MPGKPDTDDW RVERGEQIQF QSSIYSHHQP WWRGVGENAS KSSSDDQLNG SIVNGITRSE TNDKSGGGVA KEYQNIKHAM LSTPFTMEKH LAPNPQMELV
101: GHSVVLTSPY SDAQYGQILT TYGQQVMINP QLYGMHHARM PLPLEMEEEP VYVNAKQYHG ILRRRQSRAK AEIEKKVIKN RKPYLHESRH LHAMRRARGN
201: GGRFLNTKKL ENNNSNSTSD KGNNTRANAS TNSPNTQLLF TNNLNLGSSN VSQATVQHMH TEQSFTIGYH NGNGLTALYR SQANGKKEGN CFGKERDPNG
301: DFK

Best Arabidopsis Sequence Match ( AT5G12840.2 )
(BLAST)

001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSDNHGMEGN
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P

Arabidopsis Description

NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.