Factsheet for Solyc01g087240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017698	Potato	nucleus	94.06	94.06
KRH27472	Soybean	nucleus	37.62	37.62
KRH20817	Soybean	nucleus	37.29	37.17
Solyc02g069860.2.1	Tomato	nucleus	25.08	36.54
Solyc11g065700.1.1	Tomato	nucleus	35.31	35.67
VIT_13s0064g00860.t01	Wine grape	nucleus	47.52	35.56
Solyc01g008490.2.1	Tomato	nucleus	36.3	35.26
Solyc10g079150.1.1	Tomato	nucleus	24.75	34.25
GSMUA_Achr3P29730_001	Banana	nucleus	33.99	32.19
GSMUA_Achr4P03600_001	Banana	nucleus	31.35	31.88
Solyc10g081840.1.1	Tomato	nucleus	15.51	30.52
GSMUA_Achr4P11090_001	Banana	vacuole	34.65	28.69
Solyc12g009050.1.1	Tomato	nucleus	23.43	28.06
Solyc03g121940.2.1	Tomato	nucleus	21.78	27.39
Solyc01g006930.2.1	Tomato	nucleus	24.42	23.79
Solyc08g062210.2.1	Tomato	nucleus	23.1	21.54

Protein Annotations

MapMan:15.5.51.1	InterPro:CCAAT-binding_factor_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602
InterPro:IPR001289	UniProt:K4AYB4	InterPro:NFYA	PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686
PFscan:PS51152	PANTHER:PTHR12632	SMART:SM00521	EnsemblPlantsGene:Solyc01g087240.2	EnsemblPlants:Solyc01g087240.2.1	UniParc:UPI0002762F9E
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:82177393..82183727

Molecular Weight (calculated)

33182.6 Da

IEP (calculated)

8.824

GRAVY (calculated)

-0.897

Length

303 amino acids

Sequence
(BLAST)

001: MPTIAKHDGR QLETGLRITS LSTTQMQPWW HGYGDNTMPL ASENAVAQEK SEGGNQDKET KALAMESGSD GNNEQYKQHL KHFAPTTAAI MAEQQKELTG
101: HSAMLASYPY PDMQYGGMMT YGAPVHPHLF EIHHARMPLP LDMEEEPVYV NAKQYHGILR RRQIRAKAEL ERKAIKARKP YLHESRHQHA MRRARGTGGR
201: FLNTKKLNDM DCTPTETQKY GATIATHSGN SSGSGSSDQG GKEGSTVQDM HKGHSQSFTT GNGHGSSVYF SASSGSEQGN GHYGHGSWSL LVNQASQGAA
301: SSN

Best Arabidopsis Sequence Match ( AT3G20910.1 )
(BLAST)

001: MGIEDMHSKS DSGGNKVDSE VHGTVSSSIN SLNPWHRAAA ACNANSSVEA GDKSSKSIAL ALESNGSKSP SNRDNTVNKE SQVTTSPQSA GDYSDKNQES
101: LHHGITQPPP HPQLVGHTVG WASSNPYQDP YYAGVMGAYG HHPLGFVPYG GMPHSRMPLP PEMAQEPVFV NAKQYQAILR RRQARAKAEL EKKLIKSRKP
201: YLHESRHQHA MRRPRGTGGR FAKKTNTEAS KRKAEEKSNG HVTQSPSSSN SDQGEAWNGD YRTPQGDEMQ SSAYKRREEG ECSGQQWNSL SSNHPSQARL
301: AIK

Arabidopsis Description

NFYA9Nuclear transcription factor Y subunit A-9 [Source:UniProtKB/Swiss-Prot;Acc:Q945M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.