Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P03600_001 | Banana | nucleus | 52.19 | 56.04 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 59.06 | 51.64 |
| Zm00001d033602_P002 | Maize | nucleus | 35.62 | 43.18 |
| KXG37797 | Sorghum | nucleus | 35.62 | 42.7 |
| Os03t0696300-01 | Rice | nucleus | 34.69 | 42.69 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 33.75 | 40.6 |
| TraesCS4A01G277300.1 | Wheat | nucleus | 33.75 | 40.6 |
| GSMUA_Achr7P01070_001 | Banana | nucleus | 29.06 | 39.74 |
| Bra023913.1-P | Field mustard | nucleus | 22.19 | 39.44 |
| CDY37330 | Canola | nucleus | 22.19 | 39.44 |
| CDX78492 | Canola | nucleus | 24.06 | 37.56 |
| GSMUA_Achr4P31650_001 | Banana | nucleus | 26.56 | 37.28 |
| GSMUA_Achr7P07860_001 | Banana | nucleus | 22.81 | 36.32 |
| GSMUA_Achr9P10300_001 | Banana | nucleus | 26.25 | 35.9 |
| VIT_08s0007g08250.t01 | Wine grape | nucleus | 38.44 | 34.75 |
| KRH27472 | Soybean | nucleus | 32.81 | 34.65 |
| KRH20817 | Soybean | nucleus | 32.81 | 34.54 |
| Solyc01g087240.2.1 | Tomato | nucleus | 32.19 | 33.99 |
| CDX70480 | Canola | nucleus | 27.5 | 33.98 |
| Bra006165.1-P | Field mustard | nucleus | 26.88 | 33.86 |
| CDX91161 | Canola | nucleus | 22.81 | 33.33 |
| PGSC0003DMT400017698 | Potato | nucleus | 31.25 | 33.0 |
| KRH14162 | Soybean | nucleus | 31.56 | 32.9 |
| KRG98391 | Soybean | nucleus | 34.69 | 32.84 |
| KRH46473 | Soybean | nucleus | 34.38 | 32.74 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 31.25 | 32.68 |
| KRH73967 | Soybean | nucleus | 31.25 | 32.57 |
| CDX82223 | Canola | nucleus | 27.81 | 31.79 |
| AT5G12840.3 | Thale cress | nucleus | 26.88 | 31.62 |
| CDX85686 | Canola | nucleus | 23.12 | 31.36 |
| PGSC0003DMT400018959 | Potato | nucleus | 29.38 | 31.33 |
| AT3G20910.1 | Thale cress | nucleus | 29.38 | 31.02 |
| Solyc11g065700.1.1 | Tomato | nucleus | 29.06 | 31.0 |
| Bra031242.1-P | Field mustard | nucleus | 28.44 | 30.85 |
| CDY53967 | Canola | nucleus | 27.19 | 30.63 |
| Solyc01g008490.2.1 | Tomato | nucleus | 29.69 | 30.45 |
| Bra023378.1-P | Field mustard | nucleus | 22.81 | 30.42 |
| Bra008878.1-P | Field mustard | nucleus | 26.88 | 30.39 |
| CDY06393 | Canola | nucleus | 28.12 | 30.2 |
| CDX97206 | Canola | nucleus | 26.88 | 30.18 |
| PGSC0003DMT400027785 | Potato | nucleus | 29.06 | 30.0 |
| CDY32398 | Canola | nucleus | 27.5 | 29.53 |
| VIT_13s0064g00860.t01 | Wine grape | nucleus | 37.19 | 29.38 |
| CDY19591 | Canola | nucleus | 26.56 | 28.91 |
| Bra001806.1-P | Field mustard | nucleus | 27.5 | 28.57 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 25.62 | 28.18 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 25.0 | 27.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.62 | 26.28 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 24.38 | 24.61 |
| GSMUA_Achr4P28390_001 | Banana | nucleus | 22.81 | 22.67 |
| GSMUA_Achr4P31420_001 | Banana | mitochondrion, nucleus | 23.75 | 22.55 |
| GSMUA_Achr5P02590_001 | Banana | nucleus | 21.25 | 20.99 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P29730_001 | EnsemblPlants:GSMUA_Achr3T29730_001 | EnsemblPlantsGene:GSMUA_Achr3G29730_001 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001289 |
| InterPro:NFYA | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF14 | PFAM:PF02045 | PFscan:PS51152 | PRINTS:PR00616 |
| SEG:seg | SMART:SM00521 | UniParc:UPI000294C7F7 | UniProt:M0SIY9 | MapMan:15.5.51.1 | : |
Description
Putative Nuclear transcription factor Y subunit A-1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G29730_001]
Coordinates
chr3:-:28750640..28756005
Molecular Weight (calculated)
34791.9 Da
IEP (calculated)
8.324
GRAVY (calculated)
-0.668
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MESRPEGTNI VDPGLQTALP DTISAQPWWS GTMFAAMSTS KQSSAGTEVG QSRLGGGMHG TGDVSKETQS ADRKSDGNLQ PTSAATSMMH EYLAPHTQLE
101: LGQSIACAMY PFTDPYFAGV VAPYGTQAMV HPQIIGMPQS RMLLPLEMTE EPVYVNPKQY HGIIRRRQLR AKAELERKAL KVRKPYLHES RHLHAMRRAR
201: GCGGRFLNTK KTDEDAAKTD TKKGLNSGAF LSTQSTISSS SEAIPSDCSG DTNPASTMQE RMSKSQTSFS RKDGYQDQSE SEISFLHLKS GDKAEDDDCS
301: GPRSGGILVN RPSSRAVAIQ
101: LGQSIACAMY PFTDPYFAGV VAPYGTQAMV HPQIIGMPQS RMLLPLEMTE EPVYVNPKQY HGIIRRRQLR AKAELERKAL KVRKPYLHES RHLHAMRRAR
201: GCGGRFLNTK KTDEDAAKTD TKKGLNSGAF LSTQSTISSS SEAIPSDCSG DTNPASTMQE RMSKSQTSFS RKDGYQDQSE SEISFLHLKS GDKAEDDDCS
301: GPRSGGILVN RPSSRAVAIQ
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSDNHGMEGN
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.