Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008878.1-P | Field mustard | nucleus | 98.24 | 98.59 |
| CDX97206 | Canola | nucleus | 96.83 | 96.49 |
| CDX78492 | Canola | nucleus | 58.8 | 81.46 |
| CDX70480 | Canola | nucleus | 73.24 | 80.31 |
| CDX85686 | Canola | nucleus | 65.14 | 78.39 |
| CDX91161 | Canola | nucleus | 56.34 | 73.06 |
| KRG98391 | Soybean | nucleus | 50.7 | 42.6 |
| KRH46473 | Soybean | nucleus | 50.0 | 42.26 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 44.37 | 41.18 |
| Solyc11g065700.1.1 | Tomato | nucleus | 41.9 | 39.67 |
| PGSC0003DMT400018959 | Potato | nucleus | 41.55 | 39.33 |
| CDX82223 | Canola | nucleus | 37.32 | 37.86 |
| KRH73967 | Soybean | nucleus | 40.49 | 37.46 |
| CDY06393 | Canola | nucleus | 39.08 | 37.25 |
| KRH14162 | Soybean | nucleus | 39.79 | 36.81 |
| PGSC0003DMT400027785 | Potato | nucleus | 39.44 | 36.13 |
| CDY37330 | Canola | nucleus | 22.89 | 36.11 |
| Solyc01g008490.2.1 | Tomato | nucleus | 39.44 | 35.9 |
| CDY02298 | Canola | nucleus | 22.89 | 35.52 |
| CDY32398 | Canola | nucleus | 36.62 | 34.9 |
| CDY19591 | Canola | nucleus | 35.92 | 34.69 |
| CDY09571 | Canola | nucleus | 22.18 | 34.43 |
| TraesCS4A01G277300.1 | Wheat | nucleus | 32.04 | 34.21 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 31.69 | 33.83 |
| Os03t0696300-01 | Rice | nucleus | 30.63 | 33.46 |
| Zm00001d033602_P002 | Maize | nucleus | 29.93 | 32.2 |
| KXG37797 | Sorghum | nucleus | 29.93 | 31.84 |
| CDX84285 | Canola | nucleus | 20.42 | 29.59 |
| CDY31636 | Canola | nucleus | 20.42 | 29.44 |
| CDY05192 | Canola | nucleus | 18.31 | 29.05 |
| CDY69800 | Canola | nucleus | 23.24 | 28.57 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 29.93 | 28.52 |
| CDY26138 | Canola | nucleus | 23.59 | 28.51 |
| CDY02477 | Canola | nucleus | 22.89 | 28.51 |
| CDY56623 | Canola | nucleus | 23.24 | 28.21 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 30.63 | 27.19 |
| CDY51397 | Canola | nucleus | 26.41 | 26.32 |
| CDY33084 | Canola | nucleus | 26.76 | 25.42 |
| CDX98930 | Canola | nucleus | 23.59 | 25.09 |
| CDY48025 | Canola | nucleus | 25.7 | 25.09 |
| CDX70098 | Canola | nucleus | 22.89 | 24.34 |
| CDX82133 | Canola | nucleus | 27.11 | 24.14 |
| CDY18809 | Canola | nucleus | 22.89 | 23.72 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 30.28 | 23.5 |
| CDX96435 | Canola | nucleus | 26.06 | 22.98 |
| CDY14662 | Canola | nucleus | 22.18 | 22.42 |
| CDX74133 | Canola | nucleus | 22.18 | 22.42 |
| CDX72950 | Canola | nucleus | 26.76 | 22.16 |
| CDY39091 | Canola | nucleus | 23.24 | 21.43 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 17.61 | 20.83 |
| CDY33253 | Canola | nucleus | 22.54 | 20.78 |
| CDY21741 | Canola | nucleus | 22.54 | 19.88 |
| CDY70458 | Canola | nucleus | 26.06 | 18.27 |
| CDY30854 | Canola | nucleus | 8.1 | 15.75 |
| CDX81837 | Canola | nucleus | 15.14 | 14.43 |
Protein Annotations
| MapMan:15.5.51.1 | GO:A0A078IVF7 | UniProt:A0A078IVF7 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:CDY53967 | ProteinID:CDY53967 |
| ProteinID:CDY53967.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | EnsemblPlantsGene:GSBRNA2T00011831001 |
| InterPro:IPR001289 | InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF14 | SMART:SM00521 | UniParc:UPI0004EE70E4 | SEG:seg | : |
Description
BnaA10g29990DBnaA10g29990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVF7]
Coordinates
chrLK033258:-:25284..27767
Molecular Weight (calculated)
30817.5 Da
IEP (calculated)
6.850
GRAVY (calculated)
-1.018
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSKSGRGNE EEANHHHADQ QQQQPIMYPE PWWKTNAFGV IPQERPSSGI PSKSSSLDCP NGSESNDVHS ASEDGGGPGN GENDAAWKDS QAVTSSPSVD
101: QHGMEGSDPA HVAASMHGMH NQQPVQPPEL VGHYMACVPP NPYQDPYYAG MMGAYGHQPL GFRPYLGMPR ERTALPLDIT QEPVYVNAKQ YEGILRRRKA
201: RAKAELERKV INRKPYLHES RHKHAMRRAR ASGGRFAKKT EAEAAAEDAA AAGRGREKGS ATNSSGSEPV ETDSNDTLNS SGAP
101: QHGMEGSDPA HVAASMHGMH NQQPVQPPEL VGHYMACVPP NPYQDPYYAG MMGAYGHQPL GFRPYLGMPR ERTALPLDIT QEPVYVNAKQ YEGILRRRKA
201: RAKAELERKV INRKPYLHES RHKHAMRRAR ASGGRFAKKT EAEAAAEDAA AAGRGREKGS ATNSSGSEPV ETDSNDTLNS SGAP
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.