Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85686 | Canola | nucleus | 76.26 | 70.76 |
| CDX78492 | Canola | nucleus | 65.75 | 70.24 |
| CDX70480 | Canola | nucleus | 71.23 | 60.23 |
| AT5G12840.3 | Thale cress | nucleus | 71.69 | 57.72 |
| CDY53967 | Canola | nucleus | 73.06 | 56.34 |
| CDX97206 | Canola | nucleus | 73.06 | 56.14 |
| CDY37330 | Canola | nucleus | 27.85 | 33.89 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 47.03 | 33.66 |
| CDY02298 | Canola | nucleus | 26.94 | 32.24 |
| Solyc11g065700.1.1 | Tomato | nucleus | 42.92 | 31.33 |
| PGSC0003DMT400018959 | Potato | nucleus | 42.92 | 31.33 |
| CDY09571 | Canola | nucleus | 26.03 | 31.15 |
| KRG98391 | Soybean | nucleus | 47.95 | 31.07 |
| KRH46473 | Soybean | nucleus | 47.03 | 30.65 |
| CDX82223 | Canola | nucleus | 38.81 | 30.36 |
| TraesCS4A01G277300.1 | Wheat | nucleus | 36.07 | 29.7 |
| CDY05192 | Canola | nucleus | 24.2 | 29.61 |
| PGSC0003DMT400027785 | Potato | nucleus | 41.55 | 29.35 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 35.62 | 29.32 |
| CDY06393 | Canola | nucleus | 39.73 | 29.19 |
| Solyc01g008490.2.1 | Tomato | nucleus | 41.55 | 29.17 |
| CDY32398 | Canola | nucleus | 39.27 | 28.86 |
| KXG37797 | Sorghum | nucleus | 34.25 | 28.09 |
| Os03t0696300-01 | Rice | nucleus | 33.33 | 28.08 |
| CDX84285 | Canola | nucleus | 25.11 | 28.06 |
| CDY19591 | Canola | nucleus | 37.44 | 27.89 |
| KRH73967 | Soybean | nucleus | 38.81 | 27.69 |
| KRH14162 | Soybean | nucleus | 38.81 | 27.69 |
| Zm00001d033602_P002 | Maize | nucleus | 33.33 | 27.65 |
| CDY31636 | Canola | nucleus | 24.2 | 26.9 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 34.7 | 25.5 |
| CDY69800 | Canola | nucleus | 26.48 | 25.11 |
| CDY26138 | Canola | nucleus | 26.94 | 25.11 |
| CDY56623 | Canola | nucleus | 25.57 | 23.93 |
| CDY02477 | Canola | nucleus | 24.66 | 23.68 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 33.33 | 22.81 |
| CDY51397 | Canola | nucleus | 29.22 | 22.46 |
| CDY33084 | Canola | nucleus | 30.14 | 22.07 |
| CDX98930 | Canola | nucleus | 26.48 | 21.72 |
| CDY18809 | Canola | nucleus | 26.94 | 21.53 |
| CDX70098 | Canola | nucleus | 26.03 | 21.35 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 35.62 | 21.31 |
| CDY48025 | Canola | nucleus | 27.85 | 20.96 |
| CDY14662 | Canola | nucleus | 25.11 | 19.57 |
| CDX74133 | Canola | nucleus | 25.11 | 19.57 |
| CDX96435 | Canola | nucleus | 28.31 | 19.25 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 21.0 | 19.17 |
| CDX82133 | Canola | nucleus | 27.85 | 19.12 |
| CDX72950 | Canola | nucleus | 28.77 | 18.37 |
| CDY39091 | Canola | nucleus | 24.2 | 17.21 |
| CDY33253 | Canola | nucleus | 23.74 | 16.88 |
| CDY21741 | Canola | nucleus | 24.66 | 16.77 |
| CDY70458 | Canola | nucleus | 26.94 | 14.57 |
| CDY30854 | Canola | nucleus | 9.59 | 14.38 |
| CDX81837 | Canola | nucleus | 15.53 | 11.41 |
Protein Annotations
| MapMan:15.5.51.1 | GO:A0A078DPM6 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:CDX91161 | ProteinID:CDX91161 | ProteinID:CDX91161.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | EnsemblPlantsGene:GSBRNA2T00151958001 | InterPro:IPR001289 |
| InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF14 | SMART:SM00521 | UniParc:UPI0004EE98BD | SEG:seg | : | : |
Description
BnaC02g04360D
Coordinates
chrLK031865:+:1151833..1152933
Molecular Weight (calculated)
24701.6 Da
IEP (calculated)
10.013
GRAVY (calculated)
-0.629
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPMMMYPDP WWKNNSFDLL VQNQTMFIHH LKTVVRIHKL LLLLLLQCLS SVSVDNHGVE GNDQTASMDD QQVVQPPELV GHYIACVPNP YQDAYYGGMM
101: GAYGHHQPLG FRPYLGMARE RTALPLGTTQ EPVYVNAKQY EGILRRRKAR AKAELESKVI NRKPYLHESR HKHAMRRARA SGGRFAKKSE AEAAAARRGR
201: GRSSATNSSG SEQPVETDS
101: GAYGHHQPLG FRPYLGMARE RTALPLGTTQ EPVYVNAKQY EGILRRRKAR AKAELESKVI NRKPYLHESR HKHAMRRARA SGGRFAKKSE AEAAAARRGR
201: GRSSATNSSG SEQPVETDS
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.