CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73967	Soybean	nucleus	94.46	94.46
KRG98391	Soybean	nucleus	71.01	64.5
KRH46473	Soybean	nucleus	69.71	63.69
CDY37330	Canola	nucleus	34.2	58.33
Bra023913.1-P	Field mustard	nucleus	34.2	58.33
VIT_06s0004g02270.t01	Wine grape	nucleus	52.12	52.29
CDX82223	Canola	nucleus	42.35	46.43
CDY06393	Canola	nucleus	43.97	45.3
AT3G20910.1	Thale cress	nucleus	44.63	45.21
Bra031242.1-P	Field mustard	nucleus	43.32	45.08
AT5G12840.3	Thale cress	nucleus	38.76	43.75
CDX78492	Canola	nucleus	28.99	43.41
Bra006165.1-P	Field mustard	nucleus	35.83	43.31
CDY32398	Canola	nucleus	42.02	43.29
CDY19591	Canola	nucleus	41.37	43.2
CDX70480	Canola	nucleus	36.16	42.86
PGSC0003DMT400018959	Potato	nucleus	41.37	42.33
Solyc11g065700.1.1	Tomato	nucleus	41.04	42.0
Bra001806.1-P	Field mustard	nucleus	42.02	41.88
CDX97206	Canola	nucleus	38.11	41.05
Bra008878.1-P	Field mustard	nucleus	37.46	40.64
PGSC0003DMT400027785	Potato	nucleus	40.72	40.32
Solyc01g008490.2.1	Tomato	nucleus	40.72	40.06
CDY53967	Canola	nucleus	36.81	39.79
CDX91161	Canola	nucleus	27.69	38.81
Bra023378.1-P	Field mustard	nucleus	30.29	38.75
CDX85686	Canola	nucleus	29.64	38.56
KRH27472	Soybean	nucleus	34.85	35.31
KRH20817	Soybean	nucleus	34.85	35.2
Os03t0696300-01	Rice	nucleus	28.34	33.46
TraesCS4A01G277300.1	Wheat	nucleus	27.36	31.58
TraesCS4D01G033700.1	Wheat	nucleus	27.36	31.58
GSMUA_Achr3P29730_001	Banana	nucleus	32.9	31.56
KRH42997	Soybean	nucleus	21.17	31.55
KXG37797	Sorghum	nucleus	27.04	31.09
Zm00001d033602_P002	Maize	nucleus	26.71	31.06
KRH11777	Soybean	nucleus	20.52	30.73
KRH59113	Soybean	nucleus	21.17	29.95
KRH37469	Soybean	nucleus	21.82	29.39
KRH12475	Soybean	nucleus	21.5	28.95
GSMUA_Achr4P03600_001	Banana	nucleus	28.01	28.86
KRH36784	Soybean	nucleus	20.52	28.77
KRH19255	Soybean	nucleus	21.82	28.76
KRH02649	Soybean	nucleus	19.87	28.64
GSMUA_Achr4P11090_001	Banana	vacuole	32.9	27.6
KRH10071	Soybean	nucleus	23.13	23.91
KRH47551	Soybean	nucleus	26.71	23.56
KRH68018	Soybean	nucleus	24.1	22.56
KRH06120	Soybean	nucleus	23.13	22.26
KRH72156	Soybean	nucleus	23.78	21.79
KRH32866	Soybean	nucleus	22.48	21.1
KRG96274	Soybean	endoplasmic reticulum, extracellular, vacuole	22.8	20.23

Protein Annotations

EntrezGene:100815617	MapMan:15.5.51.1	EMBL:ACUP02008493	InterPro:CCAAT-binding_factor_CS	EnsemblPlantsGene:GLYMA_14G010000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016602	UniProt:I1M6C1	InterPro:IPR001289	EnsemblPlants:KRH14162
ProteinID:KRH14162	ProteinID:KRH14162.1	InterPro:NFYA	PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686
PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF14	SMART:SM00521	UniParc:UPI000233B9A9	SEG:seg

Description

hypothetical protein

Coordinates

chr14:+:773013..776952

Molecular Weight (calculated)

33891.1 Da

IEP (calculated)

7.363

GRAVY (calculated)

-0.984

Length

307 amino acids

Sequence
(BLAST)

001: MQSKSETANQ LRSDPRSFAP NQSYSEPWWR GIQCNPVPQA MSGVNISNSS SLERPNGDSE SSEEDDDATK EPQPTAPNQP GNYGQDHQAL QHSSSSAPLV
101: RDDCLTQAPQ LELVGHSIGY APFIGMPHAR MALPLEMAQE PVYVNAKQYQ GILRRRQARA KAELEKKLIK VRKPYLHESR HQHAIRRARG NGGRFAKKTE
201: VEASNHMNEE KDMGTGQVPL SRSISSSGFG SLPSDSAETW NSPSVQQGAR GSQVHERFEE RNYANVLQSS STSCLHSGER AEEGDCSGQQ RGSISSEHTS
301: QRRLAIQ

Best Arabidopsis Sequence Match ( AT3G20910.1 )
(BLAST)

001: MGIEDMHSKS DSGGNKVDSE VHGTVSSSIN SLNPWHRAAA ACNANSSVEA GDKSSKSIAL ALESNGSKSP SNRDNTVNKE SQVTTSPQSA GDYSDKNQES
101: LHHGITQPPP HPQLVGHTVG WASSNPYQDP YYAGVMGAYG HHPLGFVPYG GMPHSRMPLP PEMAQEPVFV NAKQYQAILR RRQARAKAEL EKKLIKSRKP
201: YLHESRHQHA MRRPRGTGGR FAKKTNTEAS KRKAEEKSNG HVTQSPSSSN SDQGEAWNGD YRTPQGDEMQ SSAYKRREEG ECSGQQWNSL SSNHPSQARL
301: AIK

Arabidopsis Description

NFYA9Nuclear transcription factor Y subunit A-9 [Source:UniProtKB/Swiss-Prot;Acc:Q945M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.