Factsheet for Bra006165.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78492	Canola	nucleus	77.95	96.59
Bra023378.1-P	Field mustard	nucleus	72.05	76.25
Bra008878.1-P	Field mustard	nucleus	78.74	70.67
KRG98391	Soybean	nucleus	53.15	39.94
KRH46473	Soybean	nucleus	51.97	39.29
Solyc11g065700.1.1	Tomato	nucleus	43.7	37.0
PGSC0003DMT400018959	Potato	nucleus	43.7	37.0
VIT_06s0004g02270.t01	Wine grape	nucleus	44.09	36.6
KRH73967	Soybean	nucleus	43.7	36.16
KRH14162	Soybean	nucleus	43.31	35.83
Bra023913.1-P	Field mustard	nucleus	24.8	35.0
TraesCS4A01G277300.1	Wheat	nucleus	35.83	34.21
PGSC0003DMT400027785	Potato	nucleus	41.73	34.19
Solyc01g008490.2.1	Tomato	nucleus	41.73	33.97
Os03t0696300-01	Rice	nucleus	34.65	33.85
TraesCS4D01G033700.1	Wheat	nucleus	35.43	33.83
Bra031242.1-P	Field mustard	nucleus	38.98	33.56
Bra032395.1-P	Field mustard	nucleus	24.02	33.33
KXG37797	Sorghum	nucleus	34.25	32.58
Zm00001d033602_P002	Maize	nucleus	33.86	32.58
Bra001806.1-P	Field mustard	nucleus	37.4	30.84
GSMUA_Achr4P03600_001	Banana	nucleus	34.25	29.19
Bra014368.1-P	Field mustard	nucleus	26.38	29.0
Bra005397.1-P	Field mustard	nucleus	22.44	28.93
GSMUA_Achr3P29730_001	Banana	nucleus	33.86	26.88
Bra030899.1-P	Field mustard	nucleus	26.38	26.69
Bra037968.1-P	Field mustard	nucleus	26.38	26.27
Bra008052.1-P	Field mustard	nucleus	27.95	24.4
GSMUA_Achr4P11090_001	Banana	vacuole	34.25	23.77
Bra040529.1-P	Field mustard	nucleus	25.98	23.49
Bra030996.1-P	Field mustard	mitochondrion	19.29	23.22
Bra009200.1-P	Field mustard	nucleus	24.41	23.22
Bra001164.1-P	Field mustard	nucleus	25.59	23.13
Bra016031.1-P	Field mustard	nucleus	28.35	22.36
Bra021527.1-P	Field mustard	nucleus	25.59	21.1

Protein Annotations

MapMan:15.5.51.1	EnsemblPlantsGene:Bra006165	EnsemblPlants:Bra006165.1	EnsemblPlants:Bra006165.1-P	InterPro:CCAAT-binding_factor_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016602	InterPro:IPR001289	UniProt:M4CPM6	InterPro:NFYA
PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF14
SMART:SM00521	UniParc:UPI000253F9E7	SEG:seg	:	:	:

Description

AT5G12840 (E=3e-082) HAP2A, EMB2220, ATHAP2A, NF-YA1 | NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor

Coordinates

chrA03:-:2315335..2316690

Molecular Weight (calculated)

27920.4 Da

IEP (calculated)

6.923

GRAVY (calculated)

-0.940

Length

254 amino acids

Sequence
(BLAST)

001: MQSKGSGNEV EVNHHSGEQP MMYAEEPWWK KNNSFGVVPQ EIPSVVLSKS SSLESNDVHS ASGDDGAWKD TQAATSSPSV DNHGVEGNDP AASVGNVHDQ
101: QQLVQPPELV GHYIACVPNP YQDPYYGGMV GAYGHQQLQG FRPYPGMPGE RTALPLDMTQ EPVYVNAKQY HGILRRRKAR AKAELERKLI NRKPYLHESR
201: HKHAMKRARA SGGRFAKKTE AEAAAERERE KGSATNSPGP EPVETDSNDS LPNL

Best Arabidopsis Sequence Match ( AT5G12840.1 )
(BLAST)

001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP

Arabidopsis Description

NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.