Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P11090_001 | Banana | vacuole | 69.13 | 56.28 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 56.04 | 52.19 |
| Zm00001d033602_P002 | Maize | nucleus | 36.91 | 41.67 |
| KXG37797 | Sorghum | nucleus | 37.25 | 41.57 |
| Os03t0696300-01 | Rice | nucleus | 36.24 | 41.54 |
| CDX78492 | Canola | nucleus | 26.85 | 39.02 |
| TraesCS4A01G277300.1 | Wheat | nucleus | 34.56 | 38.72 |
| GSMUA_Achr4P31650_001 | Banana | nucleus | 29.53 | 38.6 |
| GSMUA_Achr7P01070_001 | Banana | nucleus | 30.2 | 38.46 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 34.23 | 38.35 |
| GSMUA_Achr9P10300_001 | Banana | nucleus | 29.87 | 38.03 |
| Bra023913.1-P | Field mustard | nucleus | 21.81 | 36.11 |
| CDY37330 | Canola | nucleus | 21.81 | 36.11 |
| GSMUA_Achr7P07860_001 | Banana | nucleus | 24.16 | 35.82 |
| CDX91161 | Canola | nucleus | 25.5 | 34.7 |
| CDX70480 | Canola | nucleus | 29.87 | 34.36 |
| Bra006165.1-P | Field mustard | nucleus | 29.19 | 34.25 |
| CDX85686 | Canola | nucleus | 26.17 | 33.05 |
| KRH27472 | Soybean | nucleus | 33.22 | 32.67 |
| Solyc11g065700.1.1 | Tomato | nucleus | 32.89 | 32.67 |
| PGSC0003DMT400018959 | Potato | nucleus | 32.89 | 32.67 |
| Bra023378.1-P | Field mustard | nucleus | 25.5 | 31.67 |
| KRH20817 | Soybean | nucleus | 32.21 | 31.58 |
| Solyc01g087240.2.1 | Tomato | nucleus | 31.88 | 31.35 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 31.88 | 31.05 |
| PGSC0003DMT400017698 | Potato | nucleus | 31.54 | 31.02 |
| AT5G12840.3 | Thale cress | nucleus | 28.19 | 30.88 |
| CDX97206 | Canola | nucleus | 29.19 | 30.53 |
| PGSC0003DMT400027785 | Potato | nucleus | 31.54 | 30.32 |
| KRG98391 | Soybean | nucleus | 34.23 | 30.18 |
| Bra008878.1-P | Field mustard | nucleus | 28.52 | 30.04 |
| CDY53967 | Canola | nucleus | 28.52 | 29.93 |
| Solyc01g008490.2.1 | Tomato | nucleus | 31.21 | 29.81 |
| KRH46473 | Soybean | nucleus | 33.56 | 29.76 |
| VIT_08s0007g08250.t01 | Wine grape | nucleus | 35.23 | 29.66 |
| AT3G20910.1 | Thale cress | nucleus | 29.53 | 29.04 |
| CDX82223 | Canola | nucleus | 26.51 | 28.21 |
| KRH14162 | Soybean | nucleus | 28.86 | 28.01 |
| KRH73967 | Soybean | nucleus | 28.86 | 28.01 |
| Bra031242.1-P | Field mustard | nucleus | 27.18 | 27.46 |
| CDY06393 | Canola | nucleus | 26.85 | 26.85 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.85 | 26.6 |
| CDY32398 | Canola | nucleus | 25.84 | 25.84 |
| Bra001806.1-P | Field mustard | nucleus | 26.51 | 25.65 |
| VIT_13s0064g00860.t01 | Wine grape | nucleus | 34.56 | 25.43 |
| CDY19591 | Canola | nucleus | 24.83 | 25.17 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 24.5 | 25.09 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 24.16 | 25.0 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 26.17 | 24.61 |
| GSMUA_Achr4P31420_001 | Banana | mitochondrion, nucleus | 25.5 | 22.55 |
| GSMUA_Achr5P02590_001 | Banana | nucleus | 23.49 | 21.6 |
| GSMUA_Achr4P28390_001 | Banana | nucleus | 23.15 | 21.43 |
Protein Annotations
| MapMan:15.5.51.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 |
| EnsemblPlantsGene:GSMUA_Achr4G03600_001 | EnsemblPlants:GSMUA_Achr4P03600_001 | EnsemblPlants:GSMUA_Achr4T03600_001 | InterPro:IPR001289 | UniProt:M0SKS7 | InterPro:NFYA |
| PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF30 |
| SMART:SM00521 | UniParc:UPI000296F9F2 | : | : | : | : |
Description
Putative Nuclear transcription factor Y subunit A-1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G03600_001]
Coordinates
chr4:+:2864121..2869357
Molecular Weight (calculated)
32463.1 Da
IEP (calculated)
6.864
GRAVY (calculated)
-0.601
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MESYPGGTNT NTADPSVQTA LPATIDGQPW WCGPVFAAVG TSKSPSVGNE AGQSQPSDGV DDTGDASKER QNMGTRADGG LGEQRQNLLP TSSAMTSVMP
101: EILSQHAELE LGQSIACATY PFTDPYFAGV VASYGTQALM HPQLLRIPYS RMPLPLEMTE EPVYVNAKQY HGILRRRQSR AKAELEKNVI KVRKPYLHES
201: RHLHALRRAR GCGGRFLNTK KTDGATKTET QQGSTPNSPL PTQSVGSSTS LTSDCSDNAN PSSPMHETSR CESLNLIELI QKEGLYLLWY REDVGFCK
101: EILSQHAELE LGQSIACATY PFTDPYFAGV VASYGTQALM HPQLLRIPYS RMPLPLEMTE EPVYVNAKQY HGILRRRQSR AKAELEKNVI KVRKPYLHES
201: RHLHALRRAR GCGGRFLNTK KTDGATKTET QQGSTPNSPL PTQSVGSSTS LTSDCSDNAN PSSPMHETSR CESLNLIELI QKEGLYLLWY REDVGFCK
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSDNHGMEGN
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P
101: DPALSIRNMH DQPLVQPPEL VGHYIACVPN PYQDPYYGGL MGAYGHQQLG FRPYLGMPRE RTALPLDMAQ EPVYVNAKQY EGILRRRKAR AKAELERKVI
201: RDRKPYLHES RHKHAMRRAR ASGGRFAKKS EVEAGEDAGG RDRERGSATN SSGSEQVETD SNETLNSSGA P
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.