Factsheet for VIT_08s0007g08250.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g02270.t01	Wine grape	nucleus	38.7	44.77
VIT_10s0003g04650.t01	Wine grape	nucleus	25.42	43.27
Os03t0696300-01	Rice	nucleus	31.64	43.08
Zm00001d033602_P002	Maize	nucleus	31.92	42.8
TraesCS4A01G277300.1	Wheat	nucleus	31.92	42.48
TraesCS4D01G033700.1	Wheat	nucleus	31.92	42.48
KXG37797	Sorghum	nucleus	31.92	42.32
VIT_13s0064g00860.t01	Wine grape	nucleus	46.61	40.74
GSMUA_Achr3P29730_001	Banana	nucleus	34.75	38.44
GSMUA_Achr4P03600_001	Banana	nucleus	29.66	35.23
GSMUA_Achr4P11090_001	Banana	vacuole	34.46	33.33
VIT_08s0032g01190.t01	Wine grape	nucleus	25.71	27.74
VIT_09s0002g01590.t01	Wine grape	nucleus	22.88	24.11
VIT_11s0016g01480.t01	Wine grape	endoplasmic reticulum, golgi	25.42	22.33

Protein Annotations

MapMan:15.5.51.1	ProteinID:CBI29866	ProteinID:CBI29866.3	InterPro:CCAAT-binding_factor_CS	UniProt:D7THZ0	EMBL:FN595991
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602	InterPro:IPR001289	InterPro:NFYA
PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF30
SMART:SM00521	UniParc:UPI0001BE3992	ArrayExpress:VIT_08s0007g08250	EnsemblPlantsGene:VIT_08s0007g08250	EnsemblPlants:VIT_08s0007g08250.t01	unigene:Vvi.23300
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:21597124..21603336

Molecular Weight (calculated)

39133.8 Da

IEP (calculated)

8.667

GRAVY (calculated)

-0.842

Length

354 amino acids

Sequence
(BLAST)

001: MHKQTERKNQ PESKADSNNP YSICSQPWWR GLGNDVISPD VLGESSPNSA SAEHPNGGVG TIAIKSRAKV VTDNGNDPEK EMKITLASQS DGSCGQEQKH
101: PQQAVSMMPM TMAEYHLAPP SQLELVGHSI ACASYPYSEP YYTGVIPAYG PQGLVQSQFL GVNVARMALP IEMAEEPVYV NAKQYHGILR RRQSRAKAEL
201: EKKLIKVRKP YLHESRHQHA MRRARGCGGR FLNTKKLDSN ASYDMPDKGS DPDVNLSTRP ISSSVSESLP SNSSRNEDSP TSHLDARGPS VQELHNRQIA
301: SHGNGNSCYP HNQGFQLSTY HSLKDDRVEE GDHAGRQHER ILVNRAPHRA LTIK

Best Arabidopsis Sequence Match ( AT5G12840.1 )
(BLAST)

001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP

Arabidopsis Description

NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.