Factsheet for GSMUA_Achr4P28390_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P31420_001	Banana	mitochondrion, nucleus	67.7	64.69
GSMUA_Achr7P07860_001	Banana	nucleus	37.89	60.7
GSMUA_Achr5P02590_001	Banana	nucleus	58.39	58.02
Solyc10g081840.1.1	Tomato	nucleus	19.57	40.91
VIT_08s0032g01190.t01	Wine grape	nucleus	37.89	37.2
PGSC0003DMT400072322	Potato	nucleus	22.36	36.73
CDY05192	Canola	nucleus	20.19	36.31
KRH68018	Soybean	nucleus	36.96	36.28
KRH72156	Soybean	nucleus	37.27	35.82
KRH32866	Soybean	nucleus	35.71	35.17
AT5G06510.2	Thale cress	nucleus	29.19	34.94
Solyc01g006930.2.1	Tomato	nucleus	33.23	34.41
KRG96274	Soybean	endoplasmic reticulum, extracellular, vacuole	36.96	34.39
PGSC0003DMT400055061	Potato	nucleus	32.92	34.08
CDX98930	Canola	nucleus	27.33	32.96
Zm00001d007882_P001	Maize	nucleus	29.81	32.65
Bra009200.1-P	Field mustard	nucleus	26.4	31.84
CDX70098	Canola	nucleus	26.4	31.84
Os07t0158500-00	Rice	nucleus	37.27	31.66
CDY18809	Canola	nucleus	26.4	31.02
Bra001164.1-P	Field mustard	nucleus	26.71	30.61
CDX74133	Canola	nucleus	26.71	30.61
CDY14662	Canola	nucleus	26.71	30.61
Bra040529.1-P	Field mustard	nucleus	26.4	30.25
OQU88458	Sorghum	nucleus	28.26	28.17
AT3G05690.2	Thale cress	mitochondrion	28.26	27.41
GSMUA_Achr2P21730_001	Banana	nucleus	24.53	27.15
GSMUA_Achr7P01070_001	Banana	nucleus	19.57	26.92
GSMUA_Achr4P31650_001	Banana	nucleus	18.94	26.75
GSMUA_Achr9P10300_001	Banana	nucleus	19.25	26.5
GSMUA_Achr8P16700_001	Banana	nucleus	22.67	25.35
GSMUA_Achr8P30700_001	Banana	nucleus	23.91	24.29
GSMUA_AchrUn_...	Banana	nucleus	22.67	23.4
GSMUA_Achr4P03600_001	Banana	nucleus	21.43	23.15
GSMUA_Achr3P29730_001	Banana	nucleus	22.67	22.81
GSMUA_Achr4P11090_001	Banana	vacuole	22.36	19.67

Protein Annotations

MapMan:15.5.51.1	InterPro:CCAAT-binding_factor_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602
EnsemblPlantsGene:GSMUA_Achr4G28390_001	EnsemblPlants:GSMUA_Achr4P28390_001	EnsemblPlants:GSMUA_Achr4T28390_001	InterPro:IPR001289	UniProt:M0SSV1	InterPro:NFYA
PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF7
SMART:SM00521	UniParc:UPI0002957A4D	SEG:seg	:	:	:

Description

Putative Nuclear transcription factor Y subunit A-10 [Source:GMGC_GENE;Acc:GSMUA_Achr4G28390_001]

Coordinates

chr4:-:26801213..26805738

Molecular Weight (calculated)

35278.0 Da

IEP (calculated)

9.596

GRAVY (calculated)

-0.465

Length

322 amino acids

Sequence
(BLAST)

001: MQSSTIFKNH GVGQLLVSQT PQAPLVPYWV GTQPLHGEPL GQLKSVTGDH INAEQQLPVV SRRVNHFVVA GHGPGLGFEI PEKGGNSTAN CSNFPDHKDL
101: GKEQKTQQYF APFSLQSSLP ENPGHFKQGL GHSVVCPSHS YVDQFYGLYA TYGAAQAMHG RVLLPMDATT DGPIYVNAKQ FYAILRRRKA RAKAEKQNKL
201: IRVRKPYLHE SRHLHAMRRV RGRGGRFLNT EKVKDAMPPP AMSPSSEILQ HDNVNLKSAS GGSEVTSLYE QENIDHFSII ERLHASVLHP LSNMVNGGGQ
301: GSGVIHNNWG AAADGCCDLL KV

Best Arabidopsis Sequence Match ( AT5G06510.1 )
(BLAST)

001: MQTEELLSPP QTPWWNAFGS QPLTTESLSG EASDSFTGVK AVTTEAEQGV VDKQTSTTLF TFSPGGEKSS RDVPKPHVAF AMQSACFEFG FAQPMMYTKH
101: PHVEQYYGVV SAYGSQRSSG RVMIPLKMET EEDGTIYVNS KQYHGIIRRR QSRAKAEKLS RCRKPYMHHS RHLHAMRRPR GSGGRFLNTK TADAAKQSKP
201: SNSQSSEVFH PENETINSSR EANESNLSDS AVTSMDYFLS SSAYSPGGMV MPIKWNAAAM DIGCCKLNI

Arabidopsis Description

NFYA10NF-YA10 [Source:UniProtKB/TrEMBL;Acc:A0A178URE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.