Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g006930.2.1 | Tomato | nucleus | 92.93 | 92.93 |
PGSC0003DMT400072322 | Potato | nucleus | 37.3 | 59.18 |
KRH68018 | Soybean | nucleus | 50.8 | 48.17 |
VIT_08s0032g01190.t01 | Wine grape | nucleus | 50.48 | 47.87 |
KRH72156 | Soybean | nucleus | 49.52 | 45.97 |
GSMUA_Achr7P07860_001 | Banana | nucleus | 29.26 | 45.27 |
KRG96274 | Soybean | endoplasmic reticulum, extracellular, vacuole | 48.87 | 43.93 |
KRH32866 | Soybean | nucleus | 45.66 | 43.43 |
CDY05192 | Canola | nucleus | 24.44 | 42.46 |
AT5G06510.2 | Thale cress | nucleus | 33.76 | 39.03 |
CDY18809 | Canola | nucleus | 34.08 | 38.69 |
Bra040529.1-P | Field mustard | nucleus | 34.08 | 37.72 |
CDX98930 | Canola | nucleus | 32.15 | 37.45 |
CDX70098 | Canola | nucleus | 31.19 | 36.33 |
Bra009200.1-P | Field mustard | nucleus | 31.19 | 36.33 |
CDY14662 | Canola | nucleus | 32.48 | 35.94 |
CDX74133 | Canola | nucleus | 32.48 | 35.94 |
Bra001164.1-P | Field mustard | nucleus | 32.48 | 35.94 |
HORVU5Hr1G007890.1 | Barley | nucleus | 36.98 | 33.72 |
TraesCS5B01G028500.1 | Wheat | nucleus | 36.66 | 33.63 |
GSMUA_Achr4P31420_001 | Banana | mitochondrion, nucleus | 36.33 | 33.53 |
TraesCS5B01G375500.1 | Wheat | nucleus | 34.73 | 33.44 |
TraesCS5A01G373500.1 | Wheat | nucleus | 35.05 | 33.44 |
TraesCS5D01G383000.1 | Wheat | nucleus | 34.73 | 33.23 |
TraesCS5A01G029900.1 | Wheat | nucleus | 36.33 | 33.14 |
TraesCS5D01G037800.1 | Wheat | nucleus | 36.33 | 33.04 |
GSMUA_Achr4P28390_001 | Banana | nucleus | 34.08 | 32.92 |
AT3G05690.2 | Thale cress | mitochondrion | 35.05 | 32.83 |
Os12t0618600-01 | Rice | nucleus | 32.48 | 32.48 |
Zm00001d033215_P001 | Maize | nucleus | 33.44 | 32.3 |
Zm00001d031092_P001 | Maize | nucleus | 33.12 | 31.21 |
KXG37939 | Sorghum | nucleus | 34.08 | 30.72 |
PGSC0003DMT400054416 | Potato | nucleus | 20.58 | 30.48 |
Zm00001d013676_P002 | Maize | nucleus | 33.12 | 30.21 |
PGSC0003DMT400030813 | Potato | nucleus | 19.61 | 30.2 |
Os03t0647600-01 | Rice | nucleus | 34.08 | 29.94 |
GSMUA_Achr5P02590_001 | Banana | nucleus | 30.87 | 29.63 |
HORVU5Hr1G092700.5 | Barley | nucleus | 34.41 | 27.44 |
PGSC0003DMT400055982 | Potato | nucleus | 18.65 | 26.85 |
Zm00001d007882_P001 | Maize | nucleus | 24.12 | 25.51 |
PGSC0003DMT400021053 | Potato | nucleus | 19.61 | 25.42 |
Os07t0158500-00 | Rice | nucleus | 30.87 | 25.33 |
OQU79642 | Sorghum | plastid | 34.08 | 25.3 |
PGSC0003DMT400017698 | Potato | nucleus | 24.12 | 24.75 |
OQU88458 | Sorghum | nucleus | 24.12 | 23.22 |
PGSC0003DMT400006358 | Potato | nucleus | 20.58 | 22.61 |
PGSC0003DMT400027785 | Potato | nucleus | 21.86 | 21.94 |
PGSC0003DMT400018959 | Potato | nucleus | 20.9 | 21.67 |
PGSC0003DMT400000740 | Potato | nucleus | 17.68 | 18.27 |
Protein Annotations
EntrezGene:102599915 | MapMan:15.5.51.1 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001289 | UniProt:M1BXA5 |
InterPro:NFYA | PFAM:PF02045 | EnsemblPlantsGene:PGSC0003DMG400021365 | PGSC:PGSC0003DMG400021365 | EnsemblPlants:PGSC0003DMT400055061 | PRINTS:PR00616 |
PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF7 | SMART:SM00521 | UniParc:UPI000295F8EE | RefSeq:XP_006348448.1 |
SEG:seg | : | : | : | : | : |
Description
YA1 [Source:PGSC_GENE;Acc:PGSC0003DMG400021365]
Coordinates
chr1:+:2798848..2803545
Molecular Weight (calculated)
33972.4 Da
IEP (calculated)
10.096
GRAVY (calculated)
-0.490
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MHTTVFSKGN EGVVQNQSVA TLCTAPWWSS GFMSQSVAFA EPFGQLKSAS VEQQPKGNAT EFTISSGDCK SSANGQKLSN VQAATSVRAA NMDYRGHFDL
101: GFGQSLISAK YPYGEQCIGL FSAYAPQLSG RIMLPLNLAS DEGPIFVNAK QYHGILRRRK TRAKEMEKKA LKPRKPYLHL SRHLHALRRP RGCGGRFLNT
201: RNMNGTMKGG KNPDMFKTGD VQNFYPTGSQ NSEVLQSDSS NLSSPKETSG SRFFDSSGVT NMYSSGNLDP LLFQNLRPPV QAIPDMMNTG HGIFMSGKWV
301: GTADSCCNLK V
101: GFGQSLISAK YPYGEQCIGL FSAYAPQLSG RIMLPLNLAS DEGPIFVNAK QYHGILRRRK TRAKEMEKKA LKPRKPYLHL SRHLHALRRP RGCGGRFLNT
201: RNMNGTMKGG KNPDMFKTGD VQNFYPTGSQ NSEVLQSDSS NLSSPKETSG SRFFDSSGVT NMYSSGNLDP LLFQNLRPPV QAIPDMMNTG HGIFMSGKWV
301: GTADSCCNLK V
001: MQTEELLSPP QTPWWNAFGS QPLTTESLSG EASDSFTGVK AVTTEAEQGV VDKQTSTTLF TFSPGGEKSS RDVPKPHVAF AMQSACFEFG FAQPMMYTKH
101: PHVEQYYGVV SAYGSQRSSG RVMIPLKMET EEDGTIYVNS KQYHGIIRRR QSRAKAEKLS RCRKPYMHHS RHLHAMRRPR GSGGRFLNTK TADAAKQSKP
201: SNSQSSEVFH PENETINSSR EANESNLSDS AVTSMDYFLS SSAYSPGGMV MPIKWNAAAM DIGCCKLNI
101: PHVEQYYGVV SAYGSQRSSG RVMIPLKMET EEDGTIYVNS KQYHGIIRRR QSRAKAEKLS RCRKPYMHHS RHLHAMRRPR GSGGRFLNTK TADAAKQSKP
201: SNSQSSEVFH PENETINSSR EANESNLSDS AVTSMDYFLS SSAYSPGGMV MPIKWNAAAM DIGCCKLNI
Arabidopsis Description
NFYA10NF-YA10 [Source:UniProtKB/TrEMBL;Acc:A0A178URE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.