Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g121940.2.1 | Tomato | nucleus | 72.08 | 84.65 |
| CDY69800 | Canola | nucleus | 30.04 | 36.8 |
| CDY02477 | Canola | nucleus | 29.33 | 36.4 |
| Bra014368.1-P | Field mustard | nucleus | 29.68 | 36.36 |
| CDY56623 | Canola | nucleus | 30.04 | 36.32 |
| CDY26138 | Canola | nucleus | 30.04 | 36.17 |
| PGSC0003DMT400030813 | Potato | nucleus | 25.09 | 35.15 |
| Bra037968.1-P | Field mustard | nucleus | 31.1 | 34.51 |
| Bra030899.1-P | Field mustard | nucleus | 30.39 | 34.26 |
| PGSC0003DMT400055982 | Potato | nucleus | 25.44 | 33.33 |
| PGSC0003DMT400054416 | Potato | nucleus | 24.03 | 32.38 |
| CDY48025 | Canola | nucleus | 32.86 | 31.96 |
| Bra008052.1-P | Field mustard | nucleus | 32.86 | 31.96 |
| CDY51397 | Canola | nucleus | 32.16 | 31.93 |
| CDY33084 | Canola | nucleus | 32.51 | 30.77 |
| CDX82133 | Canola | nucleus | 33.92 | 30.09 |
| KRH47551 | Soybean | nucleus | 36.04 | 29.31 |
| AT1G54160.1 | Thale cress | nucleus | 31.8 | 29.22 |
| KRH10071 | Soybean | nucleus | 30.39 | 28.96 |
| Bra030996.1-P | Field mustard | mitochondrion | 21.55 | 28.91 |
| Bra021527.1-P | Field mustard | nucleus | 31.45 | 28.9 |
| CDY39091 | Canola | nucleus | 31.45 | 28.9 |
| AT3G14020.1 | Thale cress | nucleus | 31.45 | 28.9 |
| Bra016031.1-P | Field mustard | nucleus | 32.86 | 28.88 |
| KRH06120 | Soybean | nucleus | 32.51 | 28.84 |
| CDX96435 | Canola | nucleus | 32.51 | 28.57 |
| AT1G72830.2 | Thale cress | nucleus | 34.28 | 28.45 |
| PGSC0003DMT400021053 | Potato | nucleus | 24.03 | 28.33 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 33.22 | 27.98 |
| CDY33253 | Canola | nucleus | 30.39 | 27.92 |
| AT1G17590.3 | Thale cress | nucleus | 31.45 | 27.13 |
| CDX72950 | Canola | nucleus | 32.86 | 27.11 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 22.97 | 27.08 |
| PGSC0003DMT400027785 | Potato | nucleus | 29.33 | 26.77 |
| PGSC0003DMT400072322 | Potato | nucleus | 18.37 | 26.53 |
| PGSC0003DMT400018959 | Potato | nucleus | 27.56 | 26.0 |
| CDY21741 | Canola | nucleus | 28.98 | 25.47 |
| PGSC0003DMT400000740 | Potato | nucleus | 26.86 | 25.25 |
| PGSC0003DMT400017698 | Potato | nucleus | 26.5 | 24.75 |
| CDY70458 | Canola | nucleus | 32.51 | 22.72 |
| PGSC0003DMT400055061 | Potato | nucleus | 22.61 | 20.58 |
| CDY30854 | Canola | nucleus | 10.6 | 20.55 |
| CDX81837 | Canola | nucleus | 21.2 | 20.13 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400006358 | EnsemblPlantsGene:PGSC0003DMG400002484 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001289 | InterPro:NFYA |
| PANTHER:PTHR12632 | PANTHER:PTHR12632:SF8 | PFAM:PF02045 | PFscan:PS51152 | PGSC:PGSC0003DMG400002484 | PRINTS:PR00616 |
| SEG:seg | SMART:SM00521 | UniParc:UPI0002953194 | UniProt:M0ZR71 | MapMan:15.5.51.1 | : |
Description
YA6 [Source:PGSC_GENE;Acc:PGSC0003DMG400002484]
Coordinates
chr3:-:61146163..61151721
Molecular Weight (calculated)
31870.1 Da
IEP (calculated)
10.101
GRAVY (calculated)
-1.028
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTFPGPQNS KELNYHFQDQ DSSSTQSTSQ SCPEAANEGE RKSHGKSSMP LRAGSVRSSG KSDDSQSVSS QEHGWTFDMY QKNFAVVPFP HPDPYYHGLV
101: AAYGNQAMVQ SQMLGMVSPR VPLPLDLKQD EPIFVNAKQY QAILRRRQYR ARLEAQNKLS KGRKPYLHES RHRHALNRAR GPGGRFVNMK KPRESKSPDL
201: INGQDNQVSD ELQLNRKMLE PNIHQSRSYS TPVYSGITSG SNGDAIYHHQ SFKYSAFSAR NRGTSQLDKE KKDNTSNPCL SSF
101: AAYGNQAMVQ SQMLGMVSPR VPLPLDLKQD EPIFVNAKQY QAILRRRQYR ARLEAQNKLS KGRKPYLHES RHRHALNRAR GPGGRFVNMK KPRESKSPDL
201: INGQDNQVSD ELQLNRKMLE PNIHQSRSYS TPVYSGITSG SNGDAIYHHQ SFKYSAFSAR NRGTSQLDKE KKDNTSNPCL SSF
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKPYLHESRH VHALKRPRGS GGRFLNTKKL LQESEQAAAR EQEQDKLGQQ VNRKTNMSRF EAHMLQNNKD RSSTTSGSDI TSVSDGADIF
301: GHTEFQFSGF PTPINRAMLV HGQSNDMHGG GDMHHFSVHI
Arabidopsis Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.