Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39091 | Canola | nucleus | 71.1 | 71.1 |
| Bra021527.1-P | Field mustard | nucleus | 71.1 | 71.1 |
| CDY33253 | Canola | nucleus | 68.83 | 68.83 |
| Zm00001d029489_P002 | Maize | nucleus | 18.18 | 62.22 |
| AT1G54160.1 | Thale cress | nucleus | 47.4 | 47.4 |
| KRH06120 | Soybean | nucleus | 37.66 | 36.36 |
| KRH47551 | Soybean | nucleus | 40.91 | 36.21 |
| EER92762 | Sorghum | nucleus | 28.57 | 35.48 |
| AT1G72830.2 | Thale cress | nucleus | 38.96 | 35.19 |
| Os03t0174900-01 | Rice | vacuole | 23.7 | 34.93 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 27.27 | 34.43 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 26.95 | 34.3 |
| AT1G17590.3 | Thale cress | nucleus | 35.71 | 33.54 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 30.52 | 32.3 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 30.19 | 32.29 |
| Os07t0608200-01 | Rice | nucleus | 31.82 | 32.24 |
| Os03t0411100-01 | Rice | nucleus | 32.79 | 31.86 |
| AT1G30500.2 | Thale cress | nucleus | 19.48 | 31.58 |
| PGSC0003DMT400006358 | Potato | nucleus | 28.9 | 31.45 |
| KRH10071 | Soybean | nucleus | 30.19 | 31.31 |
| EER94699 | Sorghum | nucleus | 30.84 | 30.74 |
| EER99688 | Sorghum | nucleus | 29.87 | 30.56 |
| Solyc03g121940.2.1 | Tomato | nucleus | 23.7 | 30.29 |
| Zm00001d022109_P003 | Maize | nucleus | 29.55 | 30.23 |
| AT2G34720.1 | Thale cress | nucleus | 19.16 | 29.8 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 28.9 | 29.67 |
| Zm00001d006835_P002 | Maize | nucleus | 28.9 | 29.67 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 27.92 | 29.66 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 28.57 | 29.33 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 28.57 | 29.04 |
| TraesCS6B01G366100.2 | Wheat | nucleus | 23.7 | 28.63 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 23.38 | 28.35 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 28.9 | 28.08 |
| TraesCS6A01G335400.1 | Wheat | nucleus | 23.05 | 27.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.25 | 27.88 |
| Os02t0776400-01 | Rice | nucleus | 23.7 | 27.04 |
| OQU85816 | Sorghum | nucleus | 26.3 | 26.64 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 25.0 | 26.28 |
| HORVU6Hr1G081080.12 | Barley | nucleus | 23.7 | 25.98 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 28.25 | 25.97 |
| Zm00001d027874_P004 | Maize | nucleus | 21.75 | 25.48 |
| AT3G20910.1 | Thale cress | nucleus | 24.35 | 24.75 |
| AT5G12840.3 | Thale cress | nucleus | 21.43 | 24.26 |
| AT5G06510.2 | Thale cress | nucleus | 19.16 | 21.93 |
| AT3G05690.2 | Thale cress | mitochondrion | 21.43 | 19.88 |
| Zm00001d026305_P002 | Maize | nucleus | 21.43 | 14.6 |
Protein Annotations
| MapMan:15.5.51.1 | EntrezGene:820616 | EMBL:AB493613 | ProteinID:AEE75456.1 | ProteinID:ANM65529.1 | ArrayExpress:AT3G14020 |
| EnsemblPlantsGene:AT3G14020 | RefSeq:AT3G14020 | TAIR:AT3G14020 | RefSeq:AT3G14020-TAIR-G | EnsemblPlants:AT3G14020.1 | TAIR:AT3G14020.1 |
| ProteinID:BAB02333.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 |
| GO:GO:0010262 | GO:GO:0016602 | GO:GO:0048316 | InterPro:IPR001289 | Symbol:NF-YA6 | InterPro:NFYA |
| RefSeq:NP_001327488.1 | RefSeq:NP_188018.1 | PFAM:PF02045 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF8 | UniProt:Q9LVJ7 | SMART:SM00521 | UniParc:UPI00000A397E | SEG:seg | : |
Description
NFYA6Nuclear transcription factor Y subunit A-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVJ7]
Coordinates
chr3:+:4641930..4644571
Molecular Weight (calculated)
34435.4 Da
IEP (calculated)
9.953
GRAVY (calculated)
-0.678
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEFHSSKDS LPCPATSWDN SVFTNSNVQG SSSLTDNNTL SLTMEMKQTG FQMQHYDSSS TQSTGGESYS EVASLSEPTN RYGHNIVVTH LSGYKENPEN
101: PIGSHSISKV SQDSVVLPIE AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLVPSR MPLPHNIPEN EPIFVNAKQY QAILRRRERR AKLEAQNKLI
201: KVRKPYLHES RHLHALKRVR GSGGRFLNTK KHQESNSSLS PPFLIPPHVF KNSPGKFRQM DISRGGVVSS VSTTSCSDIT GNNNDMFQQN PQFRFSGYPS
301: NHHVSVLM
101: PIGSHSISKV SQDSVVLPIE AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLVPSR MPLPHNIPEN EPIFVNAKQY QAILRRRERR AKLEAQNKLI
201: KVRKPYLHES RHLHALKRVR GSGGRFLNTK KHQESNSSLS PPFLIPPHVF KNSPGKFRQM DISRGGVVSS VSTTSCSDIT GNNNDMFQQN PQFRFSGYPS
301: NHHVSVLM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.