Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82133 | Canola | nucleus | 80.94 | 86.52 |
| Bra008052.1-P | Field mustard | nucleus | 69.5 | 81.44 |
| CDX96435 | Canola | nucleus | 76.83 | 81.37 |
| CDY48025 | Canola | nucleus | 69.21 | 81.1 |
| Bra016031.1-P | Field mustard | nucleus | 76.54 | 81.06 |
| CDX72950 | Canola | nucleus | 76.54 | 76.09 |
| AT1G17590.3 | Thale cress | nucleus | 63.05 | 65.55 |
| CDY70458 | Canola | nucleus | 77.42 | 65.19 |
| Zm00001d029489_P002 | Maize | nucleus | 14.96 | 56.67 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 32.84 | 46.67 |
| KRH47551 | Soybean | nucleus | 42.82 | 41.95 |
| CDY30854 | Canola | nucleus | 17.6 | 41.1 |
| KRH06120 | Soybean | nucleus | 38.42 | 41.07 |
| AT3G14020.1 | Thale cress | nucleus | 35.19 | 38.96 |
| KRH10071 | Soybean | nucleus | 33.14 | 38.05 |
| Os03t0174900-01 | Rice | vacuole | 23.17 | 37.8 |
| Os07t0608200-01 | Rice | nucleus | 33.14 | 37.17 |
| EER92762 | Sorghum | nucleus | 26.98 | 37.1 |
| GSMUA_Achr2P21730_001 | Banana | nucleus | 31.38 | 36.77 |
| GSMUA_Achr8P16700_001 | Banana | nucleus | 30.21 | 35.76 |
| TraesCS4B01G290400.1 | Wheat | nucleus | 25.22 | 35.25 |
| TraesCS4D01G289600.1 | Wheat | nucleus | 24.93 | 35.12 |
| PGSC0003DMT400006358 | Potato | nucleus | 28.45 | 34.28 |
| AT1G54160.1 | Thale cress | nucleus | 30.79 | 34.09 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 29.33 | 33.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.21 | 33.01 |
| TraesCS2B01G198700.1 | Wheat | nucleus | 29.03 | 33.0 |
| EER99688 | Sorghum | nucleus | 29.03 | 32.89 |
| Solyc03g121940.2.1 | Tomato | nucleus | 23.17 | 32.78 |
| EER94699 | Sorghum | nucleus | 29.62 | 32.69 |
| TraesCS2A01G172500.1 | Wheat | nucleus | 29.03 | 32.67 |
| GSMUA_Achr8P30700_001 | Banana | nucleus | 30.21 | 32.49 |
| VIT_09s0002g01590.t01 | Wine grape | nucleus | 31.96 | 32.44 |
| AT2G34720.1 | Thale cress | nucleus | 18.77 | 32.32 |
| AT1G30500.2 | Thale cress | nucleus | 17.89 | 32.11 |
| Zm00001d022109_P003 | Maize | nucleus | 27.57 | 31.23 |
| Os03t0411100-01 | Rice | nucleus | 28.74 | 30.91 |
| Zm00001d006835_P002 | Maize | nucleus | 26.98 | 30.67 |
| TraesCS2D01G179600.2 | Wheat | nucleus | 29.62 | 30.15 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 25.51 | 30.0 |
| TraesCS6D01G315300.1 | Wheat | nucleus | 21.99 | 29.53 |
| TraesCS6B01G366100.2 | Wheat | nucleus | 21.99 | 29.41 |
| Zm00001d027874_P004 | Maize | nucleus | 22.29 | 28.9 |
| TraesCS6A01G335400.1 | Wheat | nucleus | 21.41 | 28.74 |
| Os02t0776400-01 | Rice | nucleus | 21.99 | 27.78 |
| AT5G12840.3 | Thale cress | nucleus | 21.99 | 27.57 |
| AT3G20910.1 | Thale cress | nucleus | 23.46 | 26.4 |
| AT5G06510.2 | Thale cress | nucleus | 20.23 | 25.65 |
| HORVU6Hr1G081080.12 | Barley | nucleus | 21.11 | 25.62 |
| Zm00001d018255_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 21.99 | 25.6 |
| OQU85816 | Sorghum | nucleus | 22.29 | 25.0 |
| AT3G05690.2 | Thale cress | mitochondrion | 20.53 | 21.08 |
| Zm00001d026305_P002 | Maize | nucleus | 21.7 | 16.37 |
Protein Annotations
| MapMan:15.5.51.1 | EntrezGene:843614 | ProteinID:AEE35377.1 | ArrayExpress:AT1G72830 | EnsemblPlantsGene:AT1G72830 | RefSeq:AT1G72830 |
| TAIR:AT1G72830 | RefSeq:AT1G72830-TAIR-G | EnsemblPlants:AT1G72830.2 | TAIR:AT1G72830.2 | InterPro:CCAAT-binding_factor_CS | UniProt:F4IEZ6 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | Symbol:HAP2C | InterPro:IPR001289 |
| InterPro:NFYA | RefSeq:NP_001319368.1 | PFAM:PF02045 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00616 | ScanProsite:PS00686 |
| PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF8 | SMART:SM00521 | UniParc:UPI000034F533 | SEG:seg |
Description
HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
Coordinates
chr1:-:27405461..27407540
Molecular Weight (calculated)
37719.2 Da
IEP (calculated)
10.165
GRAVY (calculated)
-0.740
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKVPYLHESR HVHALKRPRG SGGRFLNTKK LLQESEQAAA REQEQDKLGQ QVNRKTNMSR FEAHMLQNNK DRSSTTSGSD ITSVSDGADI
301: FGHTEFQFSG FPTPINRAML VHGQSNDMHG GGDMHHFSVH I
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKVPYLHESR HVHALKRPRG SGGRFLNTKK LLQESEQAAA REQEQDKLGQ QVNRKTNMSR FEAHMLQNNK DRSSTTSGSD ITSVSDGADI
301: FGHTEFQFSG FPTPINRAML VHGQSNDMHG GGDMHHFSVH I
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.