CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51397	Canola	nucleus	91.97	96.49
Bra037968.1-P	Field mustard	nucleus	81.27	95.29
CDY69800	Canola	nucleus	63.21	81.82
CDY56623	Canola	nucleus	62.88	80.34
CDY02477	Canola	nucleus	60.54	79.39
CDY26138	Canola	nucleus	62.21	79.15
AT1G54160.1	Thale cress	nucleus	74.58	72.4
Zm00001d029489_P002	Maize	nucleus	18.06	60.0
CDY39091	Canola	nucleus	46.82	45.45
CDY33253	Canola	nucleus	45.15	43.83
CDY48025	Canola	nucleus	35.79	36.77
TraesCS4B01G290400.1	Wheat	nucleus	29.1	35.66
TraesCS4D01G289600.1	Wheat	nucleus	28.76	35.54
Os03t0174900-01	Rice	vacuole	24.75	35.41
CDX82133	Canola	nucleus	37.46	35.11
KRH47551	Soybean	nucleus	40.13	34.48
EER92762	Sorghum	nucleus	28.43	34.27
CDY02298	Canola	nucleus	20.74	33.88
CDY09571	Canola	nucleus	20.74	33.88
KRH06120	Soybean	nucleus	36.12	33.86
CDX96435	Canola	nucleus	35.79	33.23
CDX78492	Canola	nucleus	22.74	33.17
PGSC0003DMT400006358	Potato	nucleus	30.77	32.51
GSMUA_Achr8P16700_001	Banana	nucleus	31.1	32.29
Os07t0608200-01	Rice	nucleus	32.78	32.24
CDX84285	Canola	nucleus	21.07	32.14
HORVU2Hr1G032130.4	Barley	nucleus	32.11	32.0
CDY31636	Canola	nucleus	21.07	31.98
GSMUA_Achr2P21730_001	Banana	nucleus	31.1	31.96
KRH10071	Soybean	nucleus	31.1	31.31
EER99688	Sorghum	nucleus	31.44	31.23
CDX72950	Canola	nucleus	35.79	31.2
TraesCS2B01G198700.1	Wheat	nucleus	31.1	31.0
CDY21741	Canola	nucleus	33.11	30.75
CDY05192	Canola	nucleus	18.39	30.73
TraesCS2A01G172500.1	Wheat	nucleus	31.1	30.69
Zm00001d022109_P003	Maize	nucleus	30.77	30.56
CDX85686	Canola	nucleus	24.08	30.51
Zm00001d006835_P002	Maize	nucleus	30.43	30.33
CDX91161	Canola	nucleus	22.07	30.14
CDX72947	Canola	nucleus, plasma membrane, plastid	24.08	30.0
Os02t0776400-01	Rice	nucleus	27.09	30.0
HORVU4Hr1G075830.4	Barley	nucleus	29.1	30.0
Solyc03g121940.2.1	Tomato	nucleus	24.08	29.88
GSMUA_AchrUn_...	Banana	nucleus	31.1	29.81
EER94699	Sorghum	nucleus	30.77	29.77
TraesCS6D01G315300.1	Wheat	nucleus	25.08	29.53
CDY37330	Canola	nucleus	17.73	29.44
TraesCS6B01G366100.2	Wheat	nucleus	25.08	29.41
Os03t0411100-01	Rice	nucleus	31.1	29.34
TraesCS6A01G335400.1	Wheat	nucleus	24.41	28.74
OQU85816	Sorghum	nucleus	29.1	28.62
Zm00001d018255_P001	Maize	endoplasmic reticulum, extracellular, golgi	27.76	28.33
CDX70480	Canola	nucleus	24.41	28.19
GSMUA_Achr8P30700_001	Banana	nucleus	29.77	28.08
TraesCS2D01G179600.2	Wheat	nucleus	31.1	27.76
CDY53967	Canola	nucleus	25.42	26.76
HORVU6Hr1G081080.12	Barley	nucleus	25.08	26.69
CDX81837	Canola	nucleus	26.42	26.51
CDX97206	Canola	nucleus	25.08	26.32
CDX82223	Canola	nucleus	24.41	26.07
CDY70458	Canola	nucleus	35.12	25.93
Zm00001d027874_P004	Maize	nucleus	22.74	25.86
CDY06393	Canola	nucleus	24.75	24.83
CDY18809	Canola	nucleus	22.74	24.82
CDY14662	Canola	nucleus	23.08	24.56
CDX74133	Canola	nucleus	23.08	24.56
CDY32398	Canola	nucleus	24.41	24.5
CDY19591	Canola	nucleus	23.08	23.47
CDY30854	Canola	nucleus	11.37	23.29
CDX70098	Canola	nucleus	20.74	23.22
CDX98930	Canola	nucleus	20.4	22.85
Zm00001d026305_P002	Maize	nucleus	22.74	15.04

Protein Annotations

MapMan:15.5.51.1	GO:A0A078H6F4	UniProt:A0A078H6F4	InterPro:CCAAT-binding_factor_CS	EnsemblPlants:CDY33084	ProteinID:CDY33084
ProteinID:CDY33084.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602	EnsemblPlantsGene:GSBRNA2T00053729001
InterPro:IPR001289	InterPro:NFYA	PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152
PANTHER:PTHR12632	PANTHER:PTHR12632:SF8	SMART:SM00521	UniParc:UPI0004EE686C	SEG:seg	:

Description

BnaC06g06950DBnaC06g06950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6F4]

Coordinates

chrLK032305:+:363144..365132

Molecular Weight (calculated)

32871.5 Da

IEP (calculated)

9.779

GRAVY (calculated)

-0.626

Length

299 amino acids

Sequence
(BLAST)

001: MQVFQSKDSS GSTWENSNIQ RSQSFSLTKN MMMMSTTQLP SSMKHSSLQL QNQDSSSTQS TGESGGGEAA SFGEPIHYGC NSIVANTNLS DFVKPLNLFV
101: VGYNKSTTTS SIVSQEPVFP PSACGLPSWP LQCAETSHFN GFLAPEYASQ PTLSHLEMMG LVTPRVPLPH NIQENEPIFV NAKQYHAILR RRKHRAKLEA
201: QNKLIKSRKP YLHESRHLHA LKRARGSGGR FLNTKKLQES SNSSLCSSSQ MANGDGEGFS KSSTTPSSGS DRNNMFQNTP FRFSGYPSTH HVSALMSET

Best Arabidopsis Sequence Match ( AT1G54160.1 )
(BLAST)

001: MQVFQRKEDS SWGNSMPTTN SNIQGSESFS LTKDMIMSTT QLPAMKHSGL QLQNQDSTSS QSTEEESGGG EVASFGEYKR YGCSIVNNNL SGYIENLGKP
101: IENYTKSITT SSMVSQDSVF PAPTSGQISW SLQCAETSHF NGFLAPEYAS TPTALPHLEM MGLVSSRVPL PHHIQENEPI FVNAKQYHAI LRRRKHRAKL
201: EAQNKLIKCR KPYLHESRHL HALKRARGSG GRFLNTKKLQ ESSNSLCSSQ MANGQNFSMS PHGGGSGIGS SSISPSSNSN CINMFQNPQF RFSGYPSTHH
301: ASALMSGT

Arabidopsis Description

NFYA5Nuclear transcription factor Y subunit A-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.