Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78492 | Canola | nucleus | 71.04 | 89.76 |
| CDX85686 | Canola | nucleus | 67.18 | 73.73 |
| CDX97206 | Canola | nucleus | 81.08 | 73.68 |
| CDY53967 | Canola | nucleus | 80.31 | 73.24 |
| CDX91161 | Canola | nucleus | 60.23 | 71.23 |
| KRG98391 | Soybean | nucleus | 54.05 | 41.42 |
| KRH46473 | Soybean | nucleus | 52.9 | 40.77 |
| VIT_06s0004g02270.t01 | Wine grape | nucleus | 45.17 | 38.24 |
| Solyc11g065700.1.1 | Tomato | nucleus | 44.02 | 38.0 |
| PGSC0003DMT400018959 | Potato | nucleus | 44.02 | 38.0 |
| CDY37330 | Canola | nucleus | 25.48 | 36.67 |
| KRH73967 | Soybean | nucleus | 43.24 | 36.48 |
| KRH14162 | Soybean | nucleus | 42.86 | 36.16 |
| CDX82223 | Canola | nucleus | 37.45 | 34.64 |
| Solyc01g008490.2.1 | Tomato | nucleus | 41.31 | 34.29 |
| PGSC0003DMT400027785 | Potato | nucleus | 40.93 | 34.19 |
| CDY06393 | Canola | nucleus | 39.0 | 33.89 |
| CDY02298 | Canola | nucleus | 23.94 | 33.88 |
| TraesCS4A01G277300.1 | Wheat | nucleus | 33.98 | 33.08 |
| Os03t0696300-01 | Rice | nucleus | 33.2 | 33.08 |
| CDY32398 | Canola | nucleus | 37.84 | 32.89 |
| CDY09571 | Canola | nucleus | 23.17 | 32.79 |
| TraesCS4D01G033700.1 | Wheat | nucleus | 33.59 | 32.71 |
| KXG37797 | Sorghum | nucleus | 33.2 | 32.21 |
| Zm00001d033602_P002 | Maize | nucleus | 32.82 | 32.2 |
| CDY19591 | Canola | nucleus | 35.91 | 31.63 |
| CDX84285 | Canola | nucleus | 22.78 | 30.1 |
| GSMUA_Achr4P03600_001 | Banana | nucleus | 34.36 | 29.87 |
| CDY05192 | Canola | nucleus | 20.46 | 29.61 |
| CDY31636 | Canola | nucleus | 22.01 | 28.93 |
| CDY69800 | Canola | nucleus | 25.1 | 28.14 |
| GSMUA_Achr3P29730_001 | Banana | nucleus | 33.98 | 27.5 |
| CDY26138 | Canola | nucleus | 24.71 | 27.23 |
| CDY02477 | Canola | nucleus | 23.94 | 27.19 |
| CDY56623 | Canola | nucleus | 24.32 | 26.92 |
| CDY51397 | Canola | nucleus | 27.41 | 24.91 |
| GSMUA_Achr4P11090_001 | Banana | vacuole | 35.14 | 24.86 |
| CDY33084 | Canola | nucleus | 28.19 | 24.41 |
| CDX98930 | Canola | nucleus | 24.32 | 23.6 |
| CDY48025 | Canola | nucleus | 26.25 | 23.37 |
| CDY18809 | Canola | nucleus | 24.71 | 23.36 |
| CDX70098 | Canola | nucleus | 23.55 | 22.85 |
| CDY14662 | Canola | nucleus | 24.71 | 22.78 |
| CDX74133 | Canola | nucleus | 24.71 | 22.78 |
| CDX82133 | Canola | nucleus | 26.64 | 21.63 |
| CDX96435 | Canola | nucleus | 26.25 | 21.12 |
| CDX72950 | Canola | nucleus | 27.03 | 20.41 |
| CDY39091 | Canola | nucleus | 23.55 | 19.81 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 18.15 | 19.58 |
| CDY33253 | Canola | nucleus | 23.17 | 19.48 |
| CDY21741 | Canola | nucleus | 22.78 | 18.32 |
| CDY70458 | Canola | nucleus | 26.64 | 17.04 |
| CDY30854 | Canola | nucleus | 8.49 | 15.07 |
| CDX81837 | Canola | nucleus | 15.06 | 13.09 |
Protein Annotations
| MapMan:15.5.51.1 | GO:A0A078C0L5 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:CDX70480 | ProteinID:CDX70480 | ProteinID:CDX70480.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | EnsemblPlantsGene:GSBRNA2T00140306001 | InterPro:IPR001289 |
| InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF14 | SMART:SM00521 | UniParc:UPI0004EE678F | SEG:seg | : | : |
Description
BnaC03g05640D
Coordinates
chrLK031791:-:630988..633084
Molecular Weight (calculated)
28569.2 Da
IEP (calculated)
8.856
GRAVY (calculated)
-0.983
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSESGSGNE VEVNQHPGQQ PMMYAEPWWK KNNSFGVVPH KIPSVVPSKS SSLESNDVHS ASGDDGAWKD TQAATSSPSV DNHGVEGNDP AASVGNMHDH
101: QQLVQPPELV GHYIACVPNP YQDPYYGGMV EAYGHQQLQG FRPYLGMPGE RTALPLDMTQ EPVYVNAKQY QGILRRRKAR AKAELERKVI NKKPYLHESR
201: HKHAMRRARA SGGRFAKKTE AEAAAERERK RERGSATNSP GSEPVETNSN ETLNSSRAA
101: QQLVQPPELV GHYIACVPNP YQDPYYGGMV EAYGHQQLQG FRPYLGMPGE RTALPLDMTQ EPVYVNAKQY QGILRRRKAR AKAELERKVI NKKPYLHESR
201: HKHAMRRARA SGGRFAKKTE AEAAAERERK RERGSATNSP GSEPVETNSN ETLNSSRAA
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.