Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005397.1-P | Field mustard | nucleus | 98.47 | 97.97 |
| CDY31636 | Canola | nucleus | 98.47 | 97.97 |
| AT2G34720.1 | Thale cress | nucleus | 88.78 | 87.88 |
| CDY02298 | Canola | nucleus | 60.2 | 64.48 |
| CDY09571 | Canola | nucleus | 59.18 | 63.39 |
| VIT_10s0003g04650.t01 | Wine grape | nucleus | 52.55 | 49.52 |
| PGSC0003DMT400030813 | Potato | nucleus | 47.45 | 46.04 |
| KRH11777 | Soybean | nucleus | 47.96 | 45.85 |
| KRH42997 | Soybean | nucleus | 47.96 | 45.63 |
| Solyc02g069860.2.1 | Tomato | nucleus | 47.45 | 44.71 |
| KRH36784 | Soybean | nucleus | 48.98 | 43.84 |
| KRH59113 | Soybean | nucleus | 48.47 | 43.78 |
| PGSC0003DMT400054416 | Potato | nucleus | 45.92 | 42.86 |
| HORVU0Hr1G010230.1 | Barley | nucleus | 33.67 | 41.51 |
| GSMUA_Achr7P01070_001 | Banana | nucleus | 43.88 | 36.75 |
| GSMUA_Achr4P31650_001 | Banana | nucleus | 42.35 | 36.4 |
| Os08t0196700-01 | Rice | nucleus | 35.71 | 36.27 |
| GSMUA_Achr9P10300_001 | Banana | nucleus | 42.86 | 35.9 |
| TraesCS5A01G043300.2 | Wheat | nucleus | 38.27 | 35.71 |
| TraesCS5D01G052200.2 | Wheat | nucleus | 38.27 | 35.55 |
| TraesCS5B01G047100.2 | Wheat | nucleus | 37.24 | 35.27 |
| EES17387 | Sorghum | nucleus | 38.27 | 35.21 |
| HORVU5Hr1G010600.10 | Barley | nucleus | 38.27 | 35.05 |
| Os12t0613000-01 | Rice | nucleus | 37.76 | 34.1 |
| CDY05192 | Canola | nucleus | 26.02 | 28.49 |
| CDY37330 | Canola | nucleus | 26.02 | 28.33 |
| CDX78492 | Canola | nucleus | 29.08 | 27.8 |
| CDY69800 | Canola | nucleus | 30.1 | 25.54 |
| CDY56623 | Canola | nucleus | 30.1 | 25.21 |
| CDX91161 | Canola | nucleus | 28.06 | 25.11 |
| CDY26138 | Canola | nucleus | 30.1 | 25.11 |
| CDY02477 | Canola | nucleus | 29.08 | 25.0 |
| Zm00001d041491_P001 | Maize | nucleus | 36.22 | 24.57 |
| CDX85686 | Canola | nucleus | 28.06 | 23.31 |
| CDX70480 | Canola | nucleus | 30.1 | 22.78 |
| CDY48025 | Canola | nucleus | 33.67 | 22.68 |
| CDY51397 | Canola | nucleus | 31.63 | 21.75 |
| CDX72947 | Canola | nucleus, plasma membrane, plastid | 26.02 | 21.25 |
| CDX82223 | Canola | nucleus | 30.1 | 21.07 |
| CDY33084 | Canola | nucleus | 32.14 | 21.07 |
| CDY06393 | Canola | nucleus | 31.63 | 20.81 |
| CDX97206 | Canola | nucleus | 30.1 | 20.7 |
| CDY39091 | Canola | nucleus | 32.14 | 20.45 |
| CDY53967 | Canola | nucleus | 29.59 | 20.42 |
| CDX82133 | Canola | nucleus | 33.16 | 20.38 |
| CDY33253 | Canola | nucleus | 31.63 | 20.13 |
| CDY18809 | Canola | nucleus | 27.55 | 19.71 |
| CDY14662 | Canola | nucleus | 28.06 | 19.57 |
| CDX74133 | Canola | nucleus | 28.06 | 19.57 |
| CDX96435 | Canola | nucleus | 32.14 | 19.57 |
| CDX98930 | Canola | nucleus | 26.53 | 19.48 |
| CDY32398 | Canola | nucleus | 29.59 | 19.46 |
| CDX70098 | Canola | nucleus | 26.02 | 19.1 |
| CDY19591 | Canola | nucleus | 28.57 | 19.05 |
| CDX72950 | Canola | nucleus | 31.63 | 18.08 |
| CDY21741 | Canola | nucleus | 29.08 | 17.7 |
| CDY30854 | Canola | nucleus | 12.76 | 17.12 |
| CDY70458 | Canola | nucleus | 32.65 | 15.8 |
| CDX81837 | Canola | nucleus | 17.35 | 11.41 |
Protein Annotations
| MapMan:15.5.51.1 | GO:A0A078D573 | InterPro:CCAAT-binding_factor_CS | EnsemblPlants:CDX84285 | ProteinID:CDX84285 | ProteinID:CDX84285.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | EnsemblPlantsGene:GSBRNA2T00141371001 | InterPro:IPR001289 |
| InterPro:NFYA | PFAM:PF02045 | PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 |
| PANTHER:PTHR12632:SF29 | SMART:SM00521 | UniParc:UPI0001890A56 | SEG:seg | : | : |
Description
BnaC04g10470D
Coordinates
chrLK031836:+:1423156..1425219
Molecular Weight (calculated)
22081.8 Da
IEP (calculated)
9.050
GRAVY (calculated)
-1.019
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSVHELSD NNESHKKQER PDSQTPPPVP SGPCSESIDT SSVYSEPIAH GLYPYPDPYY RSVFAHQAYL PHPYPGVQMQ LMGMHQQVVP LQCDAVEEPV
101: FVNAKQYHGI LRRRQSRAKL EARNRAIKSK KPYMHESRHL HAINRPRGCG GRFLNAKKKN GERKEEEEAT SDENTSEASS SIRSEKAAMG PNVSRS
101: FVNAKQYHGI LRRRQSRAKL EARNRAIKSK KPYMHESRHL HAINRPRGCG GRFLNAKKKN GERKEEEEAT SDENTSEASS SIRSEKAAMG PNVSRS
001: MTSSVHELSD NNESHAKKER PDSQTRPQVP SGRSSESIDT NSVYSEPMAH GLYPYPDPYY RSVFAQQAYL PHPYPGVQLQ LMGMQQPGVP LQCDAVEEPV
101: FVNAKQYHGI LRRRQSRAKL EARNRAIKAK KPYMHESRHL HAIRRPRGCG GRFLNAKKEN GDHKEEEEAT SDENTSEASS SLRSEKLAMA TSGPNGRS
101: FVNAKQYHGI LRRRQSRAKL EARNRAIKAK KPYMHESRHL HAIRRPRGCG GRFLNAKKEN GDHKEEEEAT SDENTSEASS SLRSEKLAMA TSGPNGRS
Arabidopsis Description
NFYA4Nuclear transcription factor Y subunit A-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY64]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.