Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G010230.1 | Barley | nucleus | 71.96 | 96.86 |
| TraesCS5B01G047100.2 | Wheat | nucleus | 92.06 | 95.17 |
| TraesCS5A01G043300.2 | Wheat | nucleus | 92.99 | 94.76 |
| TraesCS5D01G052200.2 | Wheat | nucleus | 92.52 | 93.84 |
| Os12t0613000-01 | Rice | nucleus | 74.3 | 73.27 |
| EES17387 | Sorghum | nucleus | 71.96 | 72.3 |
| Zm00001d041491_P001 | Maize | nucleus | 68.69 | 50.87 |
| VIT_10s0003g04650.t01 | Wine grape | nucleus | 43.93 | 45.19 |
| PGSC0003DMT400054416 | Potato | nucleus | 43.93 | 44.76 |
| Solyc02g069860.2.1 | Tomato | nucleus | 42.99 | 44.23 |
| KRH42997 | Soybean | nucleus | 42.06 | 43.69 |
| AT1G30500.2 | Thale cress | nucleus | 37.85 | 42.63 |
| PGSC0003DMT400030813 | Potato | nucleus | 39.72 | 42.08 |
| KRH11777 | Soybean | nucleus | 39.72 | 41.46 |
| GSMUA_Achr7P01070_001 | Banana | nucleus | 44.39 | 40.6 |
| CDY02298 | Canola | nucleus | 34.58 | 40.44 |
| Bra032395.1-P | Field mustard | nucleus | 34.58 | 40.44 |
| GSMUA_Achr4P31650_001 | Banana | nucleus | 42.99 | 40.35 |
| KRH59113 | Soybean | nucleus | 40.65 | 40.09 |
| CDY09571 | Canola | nucleus | 34.11 | 39.89 |
| KRH36784 | Soybean | nucleus | 39.72 | 38.81 |
| GSMUA_Achr9P10300_001 | Banana | nucleus | 42.06 | 38.46 |
| CDX84285 | Canola | nucleus | 35.05 | 38.27 |
| CDY31636 | Canola | nucleus | 35.05 | 38.07 |
| Bra005397.1-P | Field mustard | nucleus | 35.05 | 38.07 |
| AT2G34720.1 | Thale cress | nucleus | 33.64 | 36.36 |
| HORVU4Hr1G075830.4 | Barley | nucleus | 39.25 | 28.97 |
| HORVU6Hr1G081080.12 | Barley | nucleus | 32.24 | 24.56 |
| HORVU2Hr1G032130.4 | Barley | nucleus | 30.84 | 22.0 |
| HORVU5Hr1G007890.1 | Barley | nucleus | 27.57 | 17.3 |
| HORVU5Hr1G092700.5 | Barley | nucleus | 28.97 | 15.9 |
Protein Annotations
| MapMan:15.5.51.1 | InterPro:CCAAT-binding_factor_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 |
| EnsemblPlantsGene:HORVU5Hr1G010600 | EnsemblPlants:HORVU5Hr1G010600.10 | InterPro:IPR001289 | UniProt:M0WK99 | InterPro:NFYA | PFAM:PF02045 |
| PRINTS:PR00616 | ScanProsite:PS00686 | PFscan:PS51152 | PANTHER:PTHR12632 | PANTHER:PTHR12632:SF18 | SMART:SM00521 |
| UniParc:UPI000294ED07 | SEG:seg | : | : | : | : |
Description
Predicted protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0WK99]
Coordinates
chrchr5H:-:26707382..26713033
Molecular Weight (calculated)
23081.6 Da
IEP (calculated)
8.426
GRAVY (calculated)
-0.974
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSVADAVSG DHRADEQQQK QAAHGNQEEA PATSIGNQAM AATPSTDYVT PYGHQEACHA MQGQIAYPTI DPYYGSLYAA YGGQPMMHPP MVGMHAAAIP
101: LPTDAIEEPV YVNAKQYNAI LRRRQSRAKA ESERKLIKGR KPYLHESRHQ HALKRARGAG GRFLNAKSDD NEEHSDSSSK DKQNGVAPRS SNGQPSSSQS
201: PKGATSADKT GNPE
101: LPTDAIEEPV YVNAKQYNAI LRRRQSRAKA ESERKLIKGR KPYLHESRHQ HALKRARGAG GRFLNAKSDD NEEHSDSSSK DKQNGVAPRS SNGQPSSSQS
201: PKGATSADKT GNPE
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
Arabidopsis Description
NFYA1Nuclear transcription factor Y subunit A-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.