Factsheet for HORVU4Hr1G003180.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G038680.8
HORVU1Hr1G075560.1
HORVU1Hr1G079910.1
HORVU3Hr1G039500.1
HORVU3Hr1G097420.1
HORVU4Hr1G012580.5
HORVU4Hr1G071510.2
HORVU4Hr1G078820.3
HORVU5Hr1G015120.1
HORVU5Hr1G052630.2
HORVU5Hr1G078170.27
HORVU5Hr1G092770.2
HORVU5Hr1G092900.2
HORVU5Hr1G109710.2
HORVU5Hr1G122800.4
HORVU6Hr1G093960.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	HORVU1Hr1G075560.1	AT1G45145.1	21798944
AT4G19700.1	HORVU3Hr1G039500.1	AT2G24570.1	21798944
AT4G19700.1	HORVU3Hr1G097420.1	AT2G24570.1	21798944
AT4G19700.1	HORVU4Hr1G012580.5	AT2G24570.1	21798944
AT4G19700.1	HORVU5Hr1G015120.1	AT2G24570.1	21798944
AT4G19700.1	HORVU5Hr1G052630.2	AT2G24570.1	21798944
AT4G19700.1	HORVU5Hr1G092770.2	AT2G24570.1	21798944
AT4G19700.1	HORVU5Hr1G122800.4	AT2G24570.1	21798944
AT4G19700.1	HORVU1Hr1G038680.8	AT2G33210.1	21798944
AT4G19700.1	HORVU4Hr1G071510.2	AT2G33210.1	21798944
AT4G19700.1	HORVU4Hr1G078820.3	AT2G33210.1	21798944
AT4G19700.1	HORVU5Hr1G078170.27	AT2G43370.1	21798944
AT4G19700.1	HORVU1Hr1G079910.1	AT3G13860.1	21798944
AT4G19700.1	HORVU5Hr1G109710.2	AT4G02770.1	21798944
AT4G19700.1	HORVU3Hr1G039500.1	AT4G31550.1	21798944
AT4G19700.1	HORVU3Hr1G097420.1	AT4G31550.1	21798944
AT4G19700.1	HORVU4Hr1G012580.5	AT4G31550.1	21798944
AT4G19700.1	HORVU5Hr1G015120.1	AT4G31550.1	21798944
AT4G19700.1	HORVU5Hr1G052630.2	AT4G31550.1	21798944
AT4G19700.1	HORVU5Hr1G092770.2	AT4G31550.1	21798944
AT4G19700.1	HORVU5Hr1G122800.4	AT4G31550.1	21798944
AT4G19700.1	HORVU6Hr1G093960.1	AT5G08330.1	21798944
AT4G19700.1	HORVU5Hr1G092900.2	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G441300.1	Wheat	mitochondrion	81.43	86.21
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	84.69	85.81
TraesCS3D01G441000.1	Wheat	mitochondrion	80.78	85.52
TraesCS4A01G293700.1	Wheat	mitochondrion	84.69	84.42
TraesCS3A01G448500.1	Wheat	mitochondrion	80.13	83.96
TraesCS4B01G019600.1	Wheat	mitochondrion	84.69	83.87
TraesCS3B01G484600.1	Wheat	cytosol	72.96	81.45
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	76.55	76.55
HORVU7Hr1G100540.2	Barley	mitochondrion	70.68	71.38
HORVU6Hr1G021960.1	Barley	plastid	46.58	54.79
HORVU6Hr1G021880.1	Barley	plastid	46.58	54.79
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	46.25	43.03
EER91098	Sorghum	nucleus	48.53	41.97
GSMUA_Achr4P28300_001	Banana	nucleus	32.9	41.91
GSMUA_Achr2P13160_001	Banana	plastid	33.55	41.7
GSMUA_Achr7P00850_001	Banana	plastid	30.29	40.43
GSMUA_Achr4P32070_001	Banana	nucleus	37.46	40.21
GSMUA_Achr5P02100_001	Banana	plastid	31.6	39.75
GSMUA_Achr4P23050_001	Banana	nucleus	23.78	38.83
GSMUA_Achr6P31690_001	Banana	nucleus	36.81	37.92
CDX94520	Canola	cytosol	26.71	35.04
CDY07541	Canola	cytosol	26.71	35.04
CDY09318	Canola	cytosol	26.71	35.04
CDY21311	Canola	cytosol	26.71	35.04
GSMUA_Achr9P09830_001	Banana	nucleus	36.16	34.58
Zm00001d033419_P001	Maize	plastid	31.27	34.29
KRH43767	Soybean	nucleus	28.01	33.99
Bra035092.1-P	Field mustard	nucleus	34.85	33.86
CDX87407	Canola	nucleus	34.85	33.86
VIT_19s0027g00740.t01	Wine grape	nucleus	33.55	33.33
VIT_10s0042g01070.t01	Wine grape	nucleus	32.25	32.67
CDX88507	Canola	nucleus	31.6	32.55
KRH50476	Soybean	cytosol, nucleus, plastid	33.55	32.19
KRG89416	Soybean	nucleus	32.25	31.53
PGSC0003DMT400062617	Potato	nucleus	30.62	31.33
KRH11729	Soybean	nucleus	31.92	31.31
KRH36722	Soybean	nucleus	31.6	31.29
AT4G19700.1	Thale cress	cytosol	30.94	31.25
CDY01615	Canola	cytosol	30.94	31.15
Bra012532.1-P	Field mustard	nucleus	30.94	31.05
CDY71607	Canola	cytosol	30.94	31.05
CDY26402	Canola	cytosol	29.64	30.74
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	29.64	30.74
Solyc02g031710.2.1	Tomato	nucleus	30.94	30.65
AT5G45100.1	Thale cress	cytosol	29.32	30.61
CDY71192	Canola	cytosol	27.36	30.0
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	31.27	29.72
CDX79294	Canola	nucleus	29.32	29.61
AT3G12920.1	Thale cress	nucleus	32.25	29.55
Bra013423.1-P	Field mustard	nucleus	28.34	29.39
CDY51918	Canola	cytosol	27.36	29.27
Bra034718.1-P	Field mustard	nucleus	31.92	29.08
KRH13682	Soybean	nucleus	31.92	29.08
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	26.38	29.03
CDY13070	Canola	cytosol	26.38	29.03
CDY24237	Canola	nucleus	30.62	29.01
Bra001477.1-P	Field mustard	nucleus	31.92	28.82
CDY64561	Canola	nucleus	31.92	28.82
AT1G79110.1	Thale cress	nucleus	33.55	28.77
Bra039354.1-P	Field mustard	cytosol	30.29	28.62
CDY43390	Canola	cytosol	30.29	28.62
CDX82568	Canola	nucleus	31.6	28.53
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	26.06	28.37
CDY18062	Canola	cytosol	26.06	28.37
CDY46345	Canola	cytosol	25.73	28.01
Solyc02g069180.2.1	Tomato	plastid	23.13	25.09
HORVU1Hr1G054930.3	Barley	cytosol	24.43	22.87
HORVU6Hr1G066640.4	Barley	nucleus	23.78	21.28
CDY23552	Canola	cytosol	14.33	20.28
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	18.24	15.18
HORVU4Hr1G061210.1	Barley	cytosol	16.94	12.59

Protein Annotations

EMBL:AK364439	EnsemblPlants:HORVU4Hr1G003180.3	EnsemblPlantsGene:HORVU4Hr1G003180	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42647	PANTHER:PTHR42647:SF12	PFscan:PS50089	SEG:seg
UniParc:UPI000200670F	UniProt:F2DKM1	MapMan:35.1	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DKM1]

Coordinates

chrchr4H:-:6250195..6252140

Molecular Weight (calculated)

32456.7 Da

IEP (calculated)

7.028

GRAVY (calculated)

-0.172

Length

307 amino acids

Sequence
(BLAST)

001: MAVDLQRLRH MLLATGAGHH QLTSAAPIPC YGAAVPSQPF GCQPCADVFA PPPTTTTTSA ADQYSELLAL AAADLARKGD GAAQEMTSGN KRRRVVDERP
101: SSALGDVLAA HAQQQAVAVD HILHRHARKM WAALAEQRRG HLRLIVSAVE ARAAKRLKAK DDEIERVRGM NWALEERLRN LFMEAQMWRD VAQSHEAAAN
201: VLRGDLQRVL DAHAVRGGAG DGDGQDDAES CCWGENQLAP VCAEEEVGTP TPALTGAGRC KGCGEGAAVV LLLPCRHLCV CAPCAASAQA CPSCGCAKNG
301: SVCVNFS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.